BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354951
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 503 1e-141
> AT4G17990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17700.1);
Has 134 Blast hits to 131 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9984386-9985805
REVERSE LENGTH=938
Length=938
Score = 503 bits (272), Expect = 1e-141
Identities = 325/350 (93%), Gaps = 5/350 (1%)
Strand=Plus/Plus
Query 501 GATGAAGAAATCGGAGTTGCGAAAACATGACTGGATTCGTCTATACATGGAACTTGCATT 560
|||||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 467 GATGAAGAAATCGGAGGTGCGAAAACAGGACTGGGTTCGTCTATACTTGGAACTTGCATT 526
Query 561 CATCCATGCAAATAAGTATCTTCCAAATCCCAATCTATCAAATTTGGTTATTATGAAGGT 620
||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 527 CATCCATGCAAATCAGTGTCTTCCAAATCCCAATCTATCAAAATTGGTTATTTTGAAGGT 586
Query 621 AGCGGTAGAAACTGAGGAAAATGTGAAGCCGCCAAATGAGAGACTCAAGGCCAGAAATGC 680
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 587 AGCTGTAGAAACTGAGGAAAATGTGAAGCAGCCAAATGAGAGACTCAAGGCCAGAAATGC 646
Query 681 AGTTTTCTACATACGGTACAGGTACTATCCTAATAAGGGACGGGCTCCTAAGGGTAATGG 740
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 647 AGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAATGG 706
Query 741 TCACAAGCCTCCCCGTGATCGCGTTGCTAT-AGTAAAAAGAACTATGGACATGAACAAGG 799
|||||||||||||||||||||| | ||||| | ||||||||||||||||||| || ||
Sbjct 707 TCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT--CAGGG 763
Query 800 GACTCCTCAAACTCGTGTTTGATAATCGGTATGCAAAAACTCTTCTGTAA 849
| || |||| ||||| ||| |||| |||||||||||||||||||||||||
Sbjct 764 G-CTTCTCACACTCGAGTTCGATACTCGGTATGCAAAAACTCTTCTGTAA 812
Score = 499 bits (270), Expect = 2e-140
Identities = 349/387 (90%), Gaps = 6/387 (2%)
Strand=Plus/Plus
Query 10 GAAGACTATGAGAAGTGCAGAGAGTTTTGGAATCGAGTGGGGGAATC-CGAGGGGTTCGA 68
|||||| ||||||||||||||||||||||| |||||||| |||||| | ||||||||||
Sbjct 80 GAAGACGATGAGAAGTGCAGAGAGTTTTGGTCTCGAGTGGCGGAATCTC-AGGGGTTCGA 138
Query 69 TGTTGAGCATTTGATGGAT-AAAATACCAGGATGGTGTTTGCTCCACTATCAAAATTCTG 127
||||||||||||||||||| | || |||| || |||||||||| |||||||||||||||
Sbjct 139 TGTTGAGCATTTGATGGATGACAA-ACCAAAATCGTGTTTGCTCGACTATCAAAATTCTG 197
Query 128 ATTTCGACAGTAAAGTCTTCCTTTATGCAAAGTTGGGGATCCATAAATACAATATGCTAC 187
||||||||| | ||||||||||| | || ||||||||||||||||||||||||||| |||
Sbjct 198 ATTTCGACACTGAAGTCTTCCTTAACGCCAAGTTGGGGATCCATAAATACAATATGTTAC 257
Query 188 AGGGGACGAATTTGGAGCTCAGTTGCATAGAGAAATGCAATTCACGACCTACCCCAGCAT 247
|||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 258 AGGGGACGAATTTGCAGCTCAGTTGCATAGAGAAATGCAATTCACGAATTACCACAGTAT 317
Query 248 TTACCGGCTACTCTATAACTTTGGTTGCTAAGGATCCATCTGCTGGCGGTTCCCTTGTAA 307
|| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GTATCGGTTACTATATAACTTTGGTTGCTAAGGATCCATCTGCTGGCGGTTCCCTTGTAA 377
Query 308 CTTTTCAGACCAAGGTTGTTAACGAAGGCCATTATAAAATCAATACCCTGACTGTCTCTA 367
|||||||||||||||||||| |||||| | ||| ||||||||||||||| || |||| |
Sbjct 378 CTTTTCAGACCAAGGTTGTTCACGAAGACTATTCTAAAATCAATACCCTCACGGTCTATC 437
Query 368 TTGCAAGACTTAAGTC-CGAACCACCA 393
|||||||||||||||| | ||||||||
Sbjct 438 TTGCAAGACTTAAGTCGC-AACCACCA 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5