BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354960
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17910.1 | Symbols: | transferases, transferring acyl group... 1906 0.0
AT4G17905.1 | Symbols: ATL4H | RING/U-box superfamily protein |... 1240 0.0
> AT4G17910.1 | Symbols: | transferases, transferring acyl groups
| chr4:9951173-9953979 REVERSE LENGTH=1636
Length=1636
Score = 1906 bits (1032), Expect = 0.0
Identities = 1211/1295 (94%), Gaps = 21/1295 (2%)
Strand=Plus/Plus
Query 118 CTCTTGGTTCTTTTACGATACTCCATTGACTTCCACTGGATAATTGATAATAATAATGGT 177
||||||||||| |||||||||||||||| ||||||||| | ||||| |||| ||||||
Sbjct 204 CTCTTGGTTCTATTACGATACTCCATTGGCTTCCACTGTAAAATTG---ATAACAATGGT 260
Query 178 G-GAATAGCCGTTTCATCGAAGAAAAACGACGATGAG---ATTGTTGTTTCCAGAAATTG 233
| || | ||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 261 GTTAA-ATCCGTTACATCGAAGAAAAACGACGATGAGAAAATTGTTATTTCCAGAAATTG 319
Query 234 GAAGGCTTACACTCATGCCATATCATTGGATTTCATCCTCATTGTCTTCCCCATGCTCCT 293
||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 320 GAAGG--------C-TGCCATATCATTGGATTTCATCTTCATTGTCTTCCCCATGCTCCT 370
Query 294 GTTTTTCACTGTTCTATCAGAATGGGTCTATCTTGGGGCAGTTTTGTTGTCTTTGTTGTT 353
|||||||||||||||||||||||||| |||| |||| ||| |||||||| |||||| |
Sbjct 371 CTTTTTCACTGTTCTATCAGAATGGGTTTATCATGGGACAGGCTTGTTGTCGTTGTTGGT 430
Query 354 GCTGATTCTTTCTCTGACTGCCAAAAGATCTTCTTCAGGGTTGCAGAGAGGACAGTCTCT 413
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 431 ACTGATTCTTTCTGTGACTGCCAAAAGATCTTTTTCAGGGTTGCAGAGAGGACAGTCTCT 490
Query 414 GTCGTTCAGAGCAAGCGTATCTTCTTATCGAGTTGCTCTGATGCTTATTACATGCTTGTG 473
||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 491 CTCGTTTAGAGCAAGTGTATCTTCTTATAGAGTTGCTCTGATGCTTATTACATGCTTGTG 550
Query 474 TATCTTGGCTGTTGATTTTACTATCTTTCCGAGGAGGTACGCCAAGACAGAGACTTATGG 533
||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 551 TATCTTGGCTGTTGACTTTACTATCTTTCCCAGAAGGTATGCCAAGACAGAGACTTATGG 610
Query 534 TACTAGCTTGATGGATCTTGGGGTTGGCTCTTTTGTGTTGGCTAATGCTATAGTTTCTCG 593
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 611 TACTAGCTTGATGGATCTTGGGGTTGGCTCTTTTGTGTTGGCTAATGCTGTTGTTTCTCG 670
Query 594 GCAAGCTAGAGACGTCTCATCAGGAAACTGGATAACTGGACTTAAAGCAACTGCTCC-TC 652
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 671 GCAAGCTAGAGACGTCTCATCAGGAAACTGGATAACTGGAATTAAAGCAACCGCTCCAT- 729
Query 653 TGCTACTT-CTCGCGTTTATTCGTCTCGTTACCACTTCAGGTGTGGATTATCAGGTCCAC 711
||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 730 TGCTA-TTACTCGGGTTTATTCGTCTTGTTACCACTTCAGGTGTGGATTATCAGGTCCAC 788
Query 712 GTTACGGAATATGGAGTACACTGGAACTTCTTTTTCACACTTGCAGCCATAGCAATTCTC 771
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 789 GTTACGGAATATGGAGTACACTGGAATTTCTTTTTCACACTTGCAGCCATATCAATTCTC 848
Query 772 ACATCATTTGTTAACATACCAGCCAAGTACTGTGGAATCCTAGGTTTCTCTGTTCTTGCA 831
||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 849 ACATCGTTTGTTAACATACCAGCCAAGTACTGTGGACTCCTAGGTTTCGCTGTTCTTGCA 908
Query 832 GGGTACCAAACTTGGTTGATTAGTGGACTGAACACATATTTGCTTTCGGACGAAAGAGGA 891
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GGGTACCAAACTTGGTTGCTTAGTGGACTGAACACATATTTGCTTTCGGACGAAAGAGGA 968
Query 892 ACTGACATTATCAGCAAAAACAAGGAAGGAGTATATAGCATTCTCGGTTATTGGGGCATG 951
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 969 ACTGACATTATCAGCAAAAACAAGGAAGGAGTATATAGCATTCTTGGTTATTGGGGCATG 1028
Query 952 TACCTTCTTGGCGTTCACTTAGGTTATCGTCTCTTTTACGCAAAACATTCAAATATTCGA 1011
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1029 TACCTTCTTGGCGTTCACTTAGGTTATCGTCTCTTTTACGGAAAACATACAAATATTCGA 1088
Query 1012 AGCACCACAAGCTCAATCGCAAGAGTCTTTCTCGTTTCTCTTCTCTTATGGATTGTGACT 1071
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1089 AGCACCACAAGCTCAATCGCTAGAGTCTTTCTCGTTTCTCTTCTCTTATGGATTGTAACT 1148
Query 1072 ATACTTCTGGACAACTACGTTGAGAGGATCTCCCGTCGAACGTGCAACATGCCTTACGTT 1131
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1149 ATACTTTTTGACAACTACGTTGAGAGGATCTCCCGTCGAACGTGTAACATGCCTTACGTT 1208
Query 1132 ACTTGGGTGCTCGCGCAAGATCTTCAGGCACTGGGGATATTTATGCTGTCTAGTTATATA 1191
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1209 ACTTGGGTGCTTGCGCAAGATCTTCAGGCGTTGGGGATATTTATGCTGTCTAGTTACATA 1268
Query 1192 CCTATGAACAAACTTTCATCACTTGAAGAAGCAATTGACCAAAATCTATTAGCTACCTTT 1251
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1269 CCTCTGAACAAGCTTTCATCACTTGAAGAAGCAATTGACCAAAATCTGTTAGCAACCTTT 1328
Query 1252 CTGCTTGCAAACCTTGTTACAGGAATAGTGAACCTCACCGTAGATACCATATTCGCTTCT 1311
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1329 CTGCTTGCAAACCTTGTTACAGGAATGGTGAACCTCACCGTAGATACCATCTTTGCTTCT 1388
Query 1312 CCATTCTCTTCTCTTCTGATATTAACCGCTTACGCCTTTGCTTTATCTGCTATTATTGGA 1371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1389 CCATTCTCTTCTCTTCTGATATTAACCGCTTACGCCTTTGCTTTATCTGCTATTATCGGA 1448
Query 1372 ACCATTCATATCTCCGGTTTCCGATTAAAGTTCTG 1406
||||||||| ||||||||||||| |||||||||||
Sbjct 1449 ACCATTCATTTCTCCGGTTTCCGGTTAAAGTTCTG 1483
Score = 187 bits (101), Expect = 4e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTCTACCAAAGCAAACTCTGAATCCAAACAAGCATCTCAAAGAACAATTTGTG 60
||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 24 ATGGATTCTGTACCAAAGCAGACTCTAAATCCAAACAAACATCTCAAAGAACAATTTGTG 83
Query 61 AGCAATCTCGATGGATCTTCAATTCTGGAAATCGCAGCACTATTAACCATTGTCCC 116
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 84 AGCAATCTCGATGGATCTTCAATTCTGGAAATCGCAGCACTATTGACCATTGTCCC 139
> AT4G17905.1 | Symbols: ATL4H | RING/U-box superfamily protein
| chr4:9948853-9949785 REVERSE LENGTH=933
Length=933
Score = 1240 bits (671), Expect = 0.0
Identities = 782/836 (94%), Gaps = 6/836 (1%)
Strand=Plus/Plus
Query 1407 TTACATCAACTTCTCTCCACCACCAATTTCCTATGAACAATTCCTAAACGACGGCGTTTC 1466
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 99 TTACATCAACTTCTCTCCACCACCAATTTCTTATGAACAATTCCTAAACGATGGCGTTGC 158
Query 1467 ATCAAACCCCAATCTATCCCCTCTTGTCATCGCTATTTTTGGAATCTTTGCAACTGCCTT 1526
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 159 ATCAAACCCCAATCTCTCCCCTCTTGTCATTGCTATTTTTGGAATATTTGCAACTGCCTT 218
Query 1527 TCTCTTGGCAGCTTACTACACTCTTGTCTCAAAGTATTGCGCCAACGACGCCACCAATGA 1586
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 219 TCTCTTGGCAGCTTACTACACTCTTGTCTCAAAGTATTGCGCCAACGACACCACCAATGA 278
Query 1587 AGCTGCCTCAGAAACCGGAAGATCAGATATAATTCTCGATGTTAACTCGCCGGAAAGTGG 1646
||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 279 AGCTGCCTCAGAATCCGGAAGATCGGATATAATTCTCGACGTTAACTCGCCGGAAAGAGG 338
Query 1647 AGACCAAGACGA-CCTTTTTTCTCATGAGTCTTCAAACGCCGGCTTAGATGATGCTCTCA 1705
|||||||||||| |||||| ||| ||||||||||| |||||||||||||||| ||||||
Sbjct 339 AGACCAAGACGATCCTTTTG-CTCTTGAGTCTTCAACCGCCGGCTTAGATGATACTCTCA 397
Query 1706 TTAAAAAGATTGGTTTCTTTAAGTTAAAGAAGCATCAAAACGGTTTCAAGCTCAAAGGTA 1765
| |||||||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||
Sbjct 398 TAAAAAAGATCGGTTTCTTCAAGTTAAAAAAGCATCAAAACGGTTTCAAGATCAACGGTA 457
Query 1766 CCGATTGTTCAATATGTCTTGGAGAGTTTAACGAAGACGAGAGCTTAAGGTTATTGCCTA 1825
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 458 CGGATTGTTCAATATGTCTTGGAGAGTTTAACGAAGACGAGAGCTTAAGGTTATTACCTA 517
Query 1826 AATGCAACCACACTTTTCACGTCGTTTGTATCGATAGGTGGCTCAAATCTCACTCAAATT 1885
||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct 518 AATGCAACCACACCTTTCATGTCGTTTGTATCGATCGGTGGCTCAAATCTCACTCAAACT 577
Query 1886 GTCCGCTTTGTCGGACTAAGATCATCATCCCTACCACTCAACAACCCGATCATCATGTTG 1945
|||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 578 GTCCGCTTTGTCGGGCTAAGATCATCGTCCCTACCACTCAACAACCTGAACATCATGTTG 637
Query 1946 TGGTGATAAATCTTGATCGATTCACGAGCAATGTTGGATCAGCAGAAGGAAATGTAGTCG 2005
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 638 TGGTGATGAATCTTGATCGGTTTACGAGCAATGTTGGATCAGCAGAAGGAAATGTAGTCG 697
Query 2006 TTGTTGATCATCGTGAAGAGGTTAGTGTTTCAATTAGTTCTCATCATCCACGTCGGTTCT 2065
||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 698 TTGATGATCATCGTGAAGAGGTTAGTGTTTCGATTAGTTCTCATCATCCAAGTTGGTTCT 757
Query 2066 CGGCCGCGGATATTGTTCTG-GGAATAAGGAGAGACGGAGAAGAGGAAGAGCAAAATTAT 2124
|||||||||||||||||||| ||| |||| || |||||||||||||||||| |||||||
Sbjct 758 CGGCCGCGGATATTGTTCTGCGGA-TAAGCAGGGACGGAGAAGAGGAAGAGGGAAATTAT 816
Query 2125 GATCTTGAAAACGGAAACAGAGA-AAAGCTTGTAGACTTGAAAAGATCATTCTCAAGTGG 2183
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 817 GATCTTGAAAATGGAAACAGAGAGAAA-CTTGTAGACTTGAAAAGATCATTCTCAAGTGG 875
Query 2184 TGAATTGGTCCTTGGGACTCAAGGAAGGACTAGAAGATCTCTAAACCTATGTCCTT 2239
|| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 876 TGGCTTGGTTCTTGGGACTCAAGGAAGGACTAGAAGATCCCTAAACATATGTCCTT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111194207175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5