BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg354975 Length=897 Score E Sequences producing significant alignments: (Bits) Value AT4G17780.1 | Symbols: | F-box and associated interaction doma... 1194 0.0 > AT4G17780.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:9880259-9881455 REVERSE LENGTH=1197 Length=1197 Score = 1194 bits (646), Expect = 0.0 Identities = 822/905 (91%), Gaps = 20/905 (2%) Strand=Plus/Plus Query 1 ATGGAGGAAGAAGAGAAAAACCCTAGTTCGATCGACATAGTTTCAGATCTACTGGAGGAT 60 ||||||||||||||||||||||||||||||||| |||||||| | ||||| || || ||| Sbjct 1 ATGGAGGAAGAAGAGAAAAACCCTAGTTCGATCTACATAGTTGCCGATCTTCTAGAAGAT 60 Query 61 ATATTCCTTCGACTTCCCTTGAAATCCATTCTAATTTCGAAAAGCGTCTCAAAACGATGG 120 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 61 ATATTCCTTCGACTTCCCTTGAAATCCATTCTCATATCGAAAAGCGTCTCAAAACGATGG 120 Query 121 AGATCAATTCTTGAATCGAAGACGTTCGTGGAGAGACGAATGAGTCTTCAAAAGAAGCGC 180 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGATCAATTCTTGAGTCGAAGACGTTCGTGGAGAGACGAATGAGTCTTCAAAAGAAGCGC 180 Query 181 AAAATCCTGGCTGCTTACAACTGCAAATGCGGCTGGGAGCCTAGGCTCCTCCCCGGGTCG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAAATCCTGGCTGCTTACAACTGCAAATGCGGCTGGGAGCCTAGGCTCCTCCCCGGGTCG 240 Query 241 TCGCGGTGCAAAGGGAATGAAGAGATGGTCTATCTGCACTACAACGCCGCACGACCCTCG 300 |||| |||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||| Sbjct 241 TCGCAGTGCAAAGGGAACGAAGAGATCGTCTATCTGCACTGCAACGCCGCACAACCCTCG 300 Query 301 TTGAGTTGCGACGGTTTGGTCTGCATTCTCGAACCACATTGGATCGACGTTTTGAACCCC 360 || | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 301 TTTACTTGCGACGGTTTGGTCTGCATTCTCGAACCACGTTGGATAGACGTTTTGAACCCC 360 Query 361 TGGACAAGGCAACTCCGGCGATACGGATACGGATTTGGACCCATAATCGGAGTATGGT-C 419 |||||||||||||||||||||||||||| |||||||||| ||||| | |||||| ||| | Sbjct 361 TGGACAAGGCAACTCCGGCGATACGGATTCGGATTTGGAACCATATTTGGAGTA-GGTTC 419 Query 420 GGCTTTCTCTCCGGGAAATTGGGCAATGGGATTTGGTAAAGACAAAGTTACCGGAAGCTA 479 |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 420 GGCTTTCTCTCCAAGACATTGGGCAATGGGATTTGGTAAAGATAAAGTTACCGGAAGCTA 479 Query 480 TAAAGTAGTGAAGATGTGTTTATTATCTTTCAGTCAAATTAGGGTACGTGATCCTGAGGT 539 |||||||||||||||||||||| ||||||||||| ||||| | | ||||||||||||||| Sbjct 480 TAAAGTAGTGAAGATGTGTTTAATATCTTTCAGTGAAATTTGTGCACGTGATCCTGAGGT 539 Query 540 GGAATATAGTGTTCTTGATGTTGAAACTGGTGAATGGCGGATGTTGAGTCCACCTCCTTG 599 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 540 GGAGTATAGTGTTCTTGATGTCGAAACTGGTGAATGGCGGATGTTGAGTCCACCTCCTTA 599 Query 600 TAAGGTCTCTTCCG-TAA-AAAGATCTGTGTGTGTGAATGGATCGATTTACTGGTTACA- 656 |||||||| || | ||| ||| ||| | ||||| |||||||||||| ||||||||||| Sbjct 600 TAAGGTCT-TTGAGGTAAGAAA-ATCGGAGTGTGCGAATGGATCGATCTACTGGTTACAC 657 Query 657 AAACATTATTGATAGGGTTTGCAAAATACTAGCCTTGGATCTTAACAAAGAAGAGTTCCA 716 |||| | | ||| |||| ||| | ||||||||||||||||||| ||||||||||||| || Sbjct 658 AAACCT-ACTGAGAGGGCTTGGACAATACTAGCCTTGGATCTTCACAAAGAAGAGTTACA 716 Query 717 TAATGTCTCTGTTCCGGCTATGAGTGCCACACAAGAAACC--C-ATATAGTGAACCTTGA 773 ||| | || ||||| | |||||||| ||| ||||||||| | | |||||||||||||| Sbjct 717 TAACATTTCAGTTCCTGATATGAGTGTCACGCAAGAAACCTTCCAAATAGTGAACCTTGA 776 Query 774 AGACCGCCTGGCCATAGCCAATACCGATACTAAGGCTGAATGGAAACTAGAGATTTGGAT 833 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 777 GGACCGCCTGGCCATAGCCAATACCTATACTAAGACTGAATGGAAACTAGAGATTTGGA- 835 Query 834 TTTGGAGCATGGATGCAGAAGTAAAAACATGGACCAAGACTTACTCTATA-AGTTTAGAG 892 | ||||||| |||||||| |||||||||||||||||||||| ||| | ||||||| Sbjct 836 ---G---CATGGATACAGAAGTAGAAACATGGACCAAGACTTACTCCATAGA-TTTAGAG 888 Query 893 AATAG 897 ||||| Sbjct 889 AATAG 893 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43804176184 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5