BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354975
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17780.1 | Symbols: | F-box and associated interaction doma... 1194 0.0
> AT4G17780.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:9880259-9881455 REVERSE LENGTH=1197
Length=1197
Score = 1194 bits (646), Expect = 0.0
Identities = 822/905 (91%), Gaps = 20/905 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAAGAGAAAAACCCTAGTTCGATCGACATAGTTTCAGATCTACTGGAGGAT 60
||||||||||||||||||||||||||||||||| |||||||| | ||||| || || |||
Sbjct 1 ATGGAGGAAGAAGAGAAAAACCCTAGTTCGATCTACATAGTTGCCGATCTTCTAGAAGAT 60
Query 61 ATATTCCTTCGACTTCCCTTGAAATCCATTCTAATTTCGAAAAGCGTCTCAAAACGATGG 120
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 ATATTCCTTCGACTTCCCTTGAAATCCATTCTCATATCGAAAAGCGTCTCAAAACGATGG 120
Query 121 AGATCAATTCTTGAATCGAAGACGTTCGTGGAGAGACGAATGAGTCTTCAAAAGAAGCGC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGATCAATTCTTGAGTCGAAGACGTTCGTGGAGAGACGAATGAGTCTTCAAAAGAAGCGC 180
Query 181 AAAATCCTGGCTGCTTACAACTGCAAATGCGGCTGGGAGCCTAGGCTCCTCCCCGGGTCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAATCCTGGCTGCTTACAACTGCAAATGCGGCTGGGAGCCTAGGCTCCTCCCCGGGTCG 240
Query 241 TCGCGGTGCAAAGGGAATGAAGAGATGGTCTATCTGCACTACAACGCCGCACGACCCTCG 300
|||| |||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 241 TCGCAGTGCAAAGGGAACGAAGAGATCGTCTATCTGCACTGCAACGCCGCACAACCCTCG 300
Query 301 TTGAGTTGCGACGGTTTGGTCTGCATTCTCGAACCACATTGGATCGACGTTTTGAACCCC 360
|| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 301 TTTACTTGCGACGGTTTGGTCTGCATTCTCGAACCACGTTGGATAGACGTTTTGAACCCC 360
Query 361 TGGACAAGGCAACTCCGGCGATACGGATACGGATTTGGACCCATAATCGGAGTATGGT-C 419
|||||||||||||||||||||||||||| |||||||||| ||||| | |||||| ||| |
Sbjct 361 TGGACAAGGCAACTCCGGCGATACGGATTCGGATTTGGAACCATATTTGGAGTA-GGTTC 419
Query 420 GGCTTTCTCTCCGGGAAATTGGGCAATGGGATTTGGTAAAGACAAAGTTACCGGAAGCTA 479
|||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GGCTTTCTCTCCAAGACATTGGGCAATGGGATTTGGTAAAGATAAAGTTACCGGAAGCTA 479
Query 480 TAAAGTAGTGAAGATGTGTTTATTATCTTTCAGTCAAATTAGGGTACGTGATCCTGAGGT 539
|||||||||||||||||||||| ||||||||||| ||||| | | |||||||||||||||
Sbjct 480 TAAAGTAGTGAAGATGTGTTTAATATCTTTCAGTGAAATTTGTGCACGTGATCCTGAGGT 539
Query 540 GGAATATAGTGTTCTTGATGTTGAAACTGGTGAATGGCGGATGTTGAGTCCACCTCCTTG 599
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 GGAGTATAGTGTTCTTGATGTCGAAACTGGTGAATGGCGGATGTTGAGTCCACCTCCTTA 599
Query 600 TAAGGTCTCTTCCG-TAA-AAAGATCTGTGTGTGTGAATGGATCGATTTACTGGTTACA- 656
|||||||| || | ||| ||| ||| | ||||| |||||||||||| |||||||||||
Sbjct 600 TAAGGTCT-TTGAGGTAAGAAA-ATCGGAGTGTGCGAATGGATCGATCTACTGGTTACAC 657
Query 657 AAACATTATTGATAGGGTTTGCAAAATACTAGCCTTGGATCTTAACAAAGAAGAGTTCCA 716
|||| | | ||| |||| ||| | ||||||||||||||||||| ||||||||||||| ||
Sbjct 658 AAACCT-ACTGAGAGGGCTTGGACAATACTAGCCTTGGATCTTCACAAAGAAGAGTTACA 716
Query 717 TAATGTCTCTGTTCCGGCTATGAGTGCCACACAAGAAACC--C-ATATAGTGAACCTTGA 773
||| | || ||||| | |||||||| ||| ||||||||| | | ||||||||||||||
Sbjct 717 TAACATTTCAGTTCCTGATATGAGTGTCACGCAAGAAACCTTCCAAATAGTGAACCTTGA 776
Query 774 AGACCGCCTGGCCATAGCCAATACCGATACTAAGGCTGAATGGAAACTAGAGATTTGGAT 833
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 777 GGACCGCCTGGCCATAGCCAATACCTATACTAAGACTGAATGGAAACTAGAGATTTGGA- 835
Query 834 TTTGGAGCATGGATGCAGAAGTAAAAACATGGACCAAGACTTACTCTATA-AGTTTAGAG 892
| ||||||| |||||||| |||||||||||||||||||||| ||| | |||||||
Sbjct 836 ---G---CATGGATACAGAAGTAGAAACATGGACCAAGACTTACTCCATAGA-TTTAGAG 888
Query 893 AATAG 897
|||||
Sbjct 889 AATAG 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5