BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354984

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17700.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   300    7e-81


> AT4G17700.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G17990.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:9854322-9855745 FORWARD LENGTH=847
Length=847

 Score =  300 bits (162),  Expect = 7e-81
 Identities = 192/207 (93%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  157  GTAGCAATAGAAACTAAAGAAAATATGGAGCCGTCAAGTGAGAGACTCAAGGCCAGGAAT  216
            ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct  629  GTAGCGATAGAAACTAAAGATAATATGGAGCCGCCAAGTGAGAGACTCAAGGCCAGGAAT  688

Query  217  GTATTTTTCTACATAAAGTACAAGTACCACGCGAATCAGGGACGAGATCCCAAGCGTCAT  276
            | |||||||||||||||||||||||||||||||||| | ||||| | ||| ||||||| |
Sbjct  689  GCATTTTTCTACATAAAGTACAAGTACCACGCGAATAAAGGACGGGGTCCTAAGCGTCGT  748

Query  277  CTTGGTCACAAGACTCGTGATCGCATAGCTATAGTAAGAAGAGCCTTAGACAAGAATACG  336
            |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| 
Sbjct  749  CTTGGTCATAAGACTCCTGATCGCATAGCTATAGTAAGAAGAACCTTAGACAAGAATACA  808

Query  337  GGACACCTCACTCTCGAGTTCCCAGAG  363
            ||| |||||||||||||||||||||||
Sbjct  809  GGATACCTCACTCTCGAGTTCCCAGAG  835


 Score =  147 bits (79),  Expect = 1e-34
 Identities = 113/129 (88%), Gaps = 4/129 (3%)
 Strand=Plus/Plus

Query  22   GAAAACCCTGTGTTGCCACGACAACCTTTGGAACTTGAACCGGTAGATGTATTCTACAAA  81
            |||||| ||| ||||||||| ||  || |||| |||||||||||||||||||||||||||
Sbjct  385  GAAAACGCTGCGTTGCCACGGCATTCTGTGGATCTTGAACCGGTAGATGTATTCTACAAA  444

Query  82   GGTAGTTTGCATGAGTGGCCGCAAGAGGATGCTTTCAATGATAATA-A-ACA--ATTTTA  137
            |||||||||| ||||||||| | ||||||||||||||||||||||| | | |  ||||||
Sbjct  445  GGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAAACGATTTTA  504

Query  138  CGTGCTGAA  146
            |||| ||||
Sbjct  505  CGTGGTGAA  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5