BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354999
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17565.1 | Symbols: | F-box family protein with a domain of... 484 6e-136
> AT4G17565.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:9782508-9783644 REVERSE
LENGTH=1137
Length=1137
Score = 484 bits (262), Expect = 6e-136
Identities = 557/693 (80%), Gaps = 46/693 (7%)
Strand=Plus/Plus
Query 401 ACCGATCAGCTTGTTTCTGGATAGACGACATAACCAAAGATTACCTAGTTGTGTGGTTCA 460
|||||||||||||| |||||||| || ||||||||||||||||||||||||| ||| ||
Sbjct 461 ACCGATCAGCTTGTCTCTGGATAAACAACATAACCAAAGATTACCTAGTTGTTTGGCCCA 520
Query 461 TCTATAAC-AATATTGTTTTTACAAAGAAAGGTTATGACTCGTGGAGATTTGTTCAAACT 519
|||||||| ||| || ||||||||||||||||| ||||| | ||| |||| | || ||
Sbjct 521 TCTATAACAAATGTT-TTTTTACAAAGAAAGGTGATGACACATGGCGATTCGCTCCCGCT 579
Query 520 AGTGAAATTCGAATGTATGATCAAATTGTCTATAATCACAAAGATCACAAGGTATA-CAC 578
|| | ||||| ||| | ||||||||| ||||||||||||||||||||||||| || ||
Sbjct 580 TGTCACATTCGGATGAAAGATCAAATTATCTATAATCACAAAGATCACAAGGTTTACCA- 638
Query 579 TTATG-TTCCTTATGGTC-ATGTCTATGAATGGGATTTCTCTGGTGATGTCCCTCCCA-G 635
|||| |||| ||||| | | |||||| |||||||||||| ||||| ||||| || |
Sbjct 639 GTATGCTTCC-TATGG-CTTTATCTATGTTTGGGATTTCTCTAGTGATATCCCT--CATG 694
Query 636 -AGACGGGTATCAT-TTACCTGCTAGTTTC--GT-TGATCGTGAGA-T--TGACCAAGAG 687
||| | ||| | | ||| ||| ||| | || ||||||| | ||| |||||
Sbjct 695 TAGATAAGCATC-TACCAGCTGTTAGCTTCATTTCTGGCCGTGAGATTGGTGA-CAAGA- 751
Query 688 GATAGATTCTATCGGGAAAAGTATCTTAACTACAAGGTAAAGATTGCAACCACATTGTAT 747
| | || |||| ||| ||| || | | | | ||| || || |||||| |
Sbjct 752 -ACAAATACTAT-AGGATAAG--TC--ATC-AGATGGT---GA-TG-----TCATTGTCT 795
Query 748 GGAGAAGTTGTGCTGGTAGAAATAATG--C-A-T-CG-CCTCACAAGTTGGCAATTTCGC 801
|||||||||||| ||||| |||||||| | | | || |||| |||| |||| ||||||
Sbjct 796 GGAGAAGTTGTGGTGGTAAAAATAATGCACTACTACGACCTCTCAAGATGGCGTTTTCGC 855
Query 802 ATCAACGAGTTAAATCCTCTAACGAAGAGATGGGTAAAAATCGACACTTTAGGTGATGAG 861
||| ||||||||||||||| ||| |||||||||||||| |||| |||||||||||| |
Sbjct 856 ATCTTCGAGTTAAATCCTCTGACGCAGAGATGGGTAAAAGTCGATTCTTTAGGTGATGCG 915
Query 862 GCTTTACTCTTGGACATGGGTTTCACTCTCGTCGCCAAAGATATCCCAGGGATCAAGAAA 921
||| || |||||||||||||| ||||| | ||||| |||||||| |||||||||||||||
Sbjct 916 GCTATAATCTTGGACATGGGTATCACTGTTGTCGCTAAAGATATTCCAGGGATCAAGAAA 975
Query 922 AACTCCATTTATTTCAGTGGCCTCAACCATCCCATAAAGGATCCTAAACATATATTTGTC 981
||||||||||||||||||||||||||||| ||| ||| |||||| || || |||||||
Sbjct 976 AACTCCATTTATTTCAGTGGCCTCAACCACCCCTTAACGGATCCCGAATGTAGATTTGTC 1035
Query 982 TATGATCTCACCACCCACACCATGGAACCTGTGCCACAATGCGTTTTC-CCATCCATGTT 1040
||||||||||| ||| ||||||||||||| |||||||||||||| || || |||||| |
Sbjct 1036 TATGATCTCACAACCGGCACCATGGAACCTTTGCCACAATGCGTTCTCTCC-TCCATGCT 1094
Query 1041 CTTCTCTGATGCTCGATGGTTCGTACCTGGTTT 1073
|||||||||| ||||||||||| ||||||||||
Sbjct 1095 CTTCTCTGATTCTCGATGGTTCTTACCTGGTTT 1127
Score = 337 bits (182), Expect = 2e-91
Identities = 336/406 (83%), Gaps = 28/406 (7%)
Strand=Plus/Plus
Query 1 ATGGACCAAAGCAAGAAGAATTCGAATCGGC--TTTCG-GTGATTCCTAATAAGTGGTCA 57
|||||||||||| | ||||| | ||||||| | || |||||||| ||||||||
Sbjct 1 ATGGACCAAAGCGACAAGAACCCTAATCGGCGGCTCCGAGTGATTCC---CAAGTGGTCG 57
Query 58 GAGCTTTGTCAGGACTTGTTACGAAGTGTTTTTGAACGATTGAGTTTCACAAATCTTACT 117
|||||||||| |||||||||||||||| |||| |||| | |||||||||||||||| | |
Sbjct 58 GAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAACAACTGAGTTTCACAAATCTCAAT 117
Query 118 CGAGCAAAATCAGTTTGTAGGTCGTGGAACTTTGCTTCCAGAGACTGCG-TCCC---C-- 171
|||||||||| |||||||||||| ||||||| |||||| |||| ||||| |||| |
Sbjct 118 CGAGCAAAATTAGTTTGTAGGTCATGGAACTCTGCTTCGAGAGGCTGCGTTCCCAAACGA 177
Query 172 AATCTGATTCCGTGGCTGATACTCTTCCCTCTAGAG-GAGAAGGCAATCAACAGCGACAA 230
|||| |||||||||| ||||||| ||||||| | || | ||| |||| | ||| | ||
Sbjct 178 AATCAGATTCCGTGGATGATACTTTTCCCTCAAAAGAGCGAAAACAAT-AGTAGCAATAA 236
Query 231 CAATAGCTGCTTGTTGTTTGTTCCGGATGATAAAGACAAAATTTACAAGACTCGAGATCT 290
| | | || || || || ||||| |||||||| |||||| |||||||||||||||||||
Sbjct 237 C--T-G-TG-TT-TTATTCGTTCCTGATGATAACGACAAAGTTTACAAGACTCGAGATCT 290
Query 291 CGGTGTTGACTTTGCACATAGTCTTTGTCTCGCGACTTACGGTAGCTGGCTCTTGATGTT 350
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 291 CGGTGTTGACTTTGCACAAAGTATTTGTCTTGCGACTTACGGTAGCTGGCTCTTGATGTT 350
Query 351 TGAGTTTGACCATCTTCGGAATC-CATACATTCTTAATCCCTTGAC 395
| | ||||||||||||||| | |||||||||||||| |||||
Sbjct 351 T-A-----ACCATCTTCGGAATCTC-TACATTCTTAATCCATTGAC 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5