BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355089
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16570.1 | Symbols: ATPRMT7, PRMT7 | protein arginine methyl... 398 5e-110
> AT4G16570.1 | Symbols: ATPRMT7, PRMT7 | protein arginine methyltransferase
7 | chr4:9336703-9340869 FORWARD LENGTH=2464
Length=2464
Score = 398 bits (215), Expect = 5e-110
Identities = 231/239 (97%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 383 TGACTCGCCTAAGAAGCTCCGTCGCTGCTCGAACCATGAGCTCTCAGTCTAGTCAACGCG 442
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 174 TGACTCGCCTAAGAAGGTCCGTCACTGCTCGAACCATGAGCTCTCAGTCTAGTCAACGCG 233
Query 443 TCTTCCAGCTCAGACAAGACCCTCTCACCGGCAATTCCGAGTGGATTGTCATCGAAGACA 502
||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||
Sbjct 234 TCTTCCAGCTCAGACAAGACCCTCTCACCGGAAATTCCGAATGGATTGTCATTGAGGACA 293
Query 503 ATGACCAACCCGGAACTTCCACTGACGGCCTCCTCGCGACGACGTCGTATCTCGACATGC 562
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 294 ATGACCAACCCGGAACTTCCACTGACGGCCTACTCGCGACGACGTCGTATCTCGACATGC 353
Query 563 TCAATGATTCTCGCCGTAACAGAGCTTATCGTCTCGCTATCGAGAAAACCATCACTGAA 621
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 354 TCAATGATTCTCGCCGTAACATAGCTTATCGTCTCGCTATCGAGAAAACCATCACTGAA 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5