BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355126
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16330.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1482 0.0
> AT4G16330.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:9226122-9227953
REVERSE LENGTH=1310
Length=1310
Score = 1482 bits (802), Expect = 0.0
Identities = 913/968 (94%), Gaps = 1/968 (0%)
Strand=Plus/Plus
Query 51 GGTTCCTTCTCAGTACATTCAGCCACCGGAAGCTCGACCTCATCT-CGATAACTCCGGCG 109
|||||||||||||||||| ||||||||||||||||||||| |||| | || || ||||||
Sbjct 167 GGTTCCTTCTCAGTACATCCAGCCACCGGAAGCTCGACCTAATCTCCCATTACCCCGGCG 226
Query 110 ATGCAGCTTCGATCCCAACCGTCGATCTCTCGAGCTCCGATTCCGCTAGAGAAGCCATCG 169
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 227 ATGCAGCTTCGATCCCAACCGTCGATCTCTCGAGCTCCGATTCCGCGAGAGAAGCCATCG 286
Query 170 GTGATGCTTGTCGCAACTGGGGAGCTTTTCACGTAATCAACCATGGCGTTCCAATCCATC 229
|||| ||||||||| |||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 287 GTGACGCTTGTCGCGACTGGGGAGCCTTCCACGTAATCAACCATGGTGTTCCAATCCATC 346
Query 230 TACTTGATCGGATGAGATCTTTAGGTCTCTCTTTCTTTCAAGACTCTCCCATGGAAGAGA 289
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 347 TCCTTGATCGGATGAGGTCTTTAGGTCTCTCTTTCTTCCAAGACTCTCCCATGGAAGAGA 406
Query 290 AGCTCCGATACGCTTGCGACTCTACATCCGCCGCGTCGGAAGGTTACGGTAGCCGGATGT 349
|||| || ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||
Sbjct 407 AGCTACGTTACGCCTGCGACTCTACCTCCGCCGCATCTGAAGGTTACGGTAGCCGTATGT 466
Query 350 TGCTCGGTGCTAAAGACGACGTCGTTTTGGATTGGAGAGATTACTTTGATCATCACACGT 409
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TGCTTGGTGCTAAAGATGACGTCGTTTTGGATTGGAGAGATTACTTTGATCATCACACGT 526
Query 410 TTCCTCTCTCTCGCCGTAACCCTTCTCGTTGGCCGATTCATCCTCCTGACTACAGACAAG 469
|||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 527 TTCCTCCCTCTCGTCGTAACCCTTCTCATTGGCCGATTCATCCTTCTGACTACAGACAAG 586
Query 470 TTGTTGGAGAATATGGTGATGAGATGAAGAAACTAGCTCAGATGCTATTAGAGCTAATCT 529
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 587 TTGTTGGAGAATATGGTGATGAGATGAAGAAACTAGCTCAGATGCTATTAGGGCTAATCT 646
Query 530 CAGAGACTTTGGGTCTTCCTTGTTCATCTATCGAAGAAGCTGTTGGTGAAATCTATCAAA 589
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 647 CAGAGAGTTTGGGTCTTCCTTGTTCATCTATAGAAGAAGCTGTTGGTGAAATCTATCAGA 706
Query 590 ACATTACTGTGAGTTATTACCCTCCTTGTCCTCAGCCTGAGCTCACACTTGGTCTTCAGT 649
|||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 707 ACATTACTGTAACCTATTACCCTCCTTGTCCTCAGCCTGAGCTCACTCTTGGTCTTCAGT 766
Query 650 CTCATTCCGATATGGGTGCCATTACTCTCTTGATTCAAGATGATGTTGGAGGTCTTCAGC 709
||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 767 CTCATTCCGATTTTGGTGCCATTACTCTCTTGATTCAAGATGATGTTGAAGGTCTTCAGC 826
Query 710 TTTACAAGGATGCTCAATGGCTCACTGTTCCTCCTAACTCTCATGCTATTCTTGTTCTTA 769
|||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 827 TTTACAAGGATGCTCAATGGCTCACTGTTCCTCCTATCTCTGATGCTATTCTCATTCTTA 886
Query 770 TAGCCGATCAAACTGAGATCATAACCAATGGGATATACAAAAGTGCTCAACATAGAGCCG 829
| ||||||||||| |||||||| |||||||| | |||||||||||||||||||||||| |
Sbjct 887 TTGCCGATCAAACCGAGATCATTACCAATGGAAGATACAAAAGTGCTCAACATAGAGCTG 946
Query 830 TAACTAATGCGAATCGGGCACGGTTATCAGTCGCTACCTTTCATGATCCTTCCAAGACTG 889
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 947 TGACTAATGCGAATCGGGCGCGGTTATCAGTCGCTACCTTTCATGATCCCTCCAAGACTG 1006
Query 890 CAAGTATAGCACCAGTTTCTCAACTATCCCCACCGTCTTACAAGGAAGTTGTATATGGTC 949
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1007 CAAGGATAGCACCAGTTTCTCAACTCTCCCCACCGTCTTACAAGGAAGTTGTGTATGGTC 1066
Query 950 AATATGTTTCTTCCTGGTACTCTAAAGGTCCTGAGGGTAAACGAAACCTCGATGCTCTTC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AATATGTTTCTTCCTGGTACTCTAAAGGTCCTGAGGGTAAACGAAACCTCGATGCTCTTC 1126
Query 1010 TCTACTAA 1017
||||||||
Sbjct 1127 TCTACTAA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5