BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355138
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16230.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1367 0.0
AT4G16220.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 329 3e-89
> AT4G16230.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr4:9185298-9186779 FORWARD LENGTH=999
Length=999
Score = 1367 bits (740), Expect = 0.0
Identities = 916/1002 (91%), Gaps = 7/1002 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTTGCTTGTTTTTCTTTTCCAAGTTATAGCT-TTATCGGTCTTGTTCTTCTCCGA 59
|||||||||||||| ||||||| |||| |||||| | |||||||||||||||||||||||
Sbjct 1 ATGTCGTTGCTTGTATTTCTTTGCCAAATTATAG-TATTATCGGTCTTGTTCTTCTCCGA 59
Query 60 GGTGTGTCATGCCGGTAAAAACATTCCGGCGAATTTTGTGTTCGGAGATTCATTGGTGGA 119
|||||| | |||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 60 GGTGTGCCTTGCCGGTAAAAAAATTCCAGCAAATTTTGTGTTCGGAGATTCATTGGTGGA 119
Query 120 TGCCGGAAACAACAACTACTTAGCCACATTGTCAAAGGCTAATTATGATCCTAATGGGAT 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 TGCCGGAAACAACAACTACTTAGCCACATTGTCAAAGGCTAATTATGTTCCTAATGGGAT 179
Query 180 CGATTTTGGATCACCTACTGGGAGATTCACCAACGGAAGAACAATCGTCGATATCGTATA 239
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 180 CGATTTTGGATCACCTACTGGTCGATTCACTAACGGAAGAACAATCGTCGATATCGTATA 239
Query 240 TCAAGCATTAGGTTCCGACGAATTAACTCCACCGTACTTAGCACCAACAACAAGAGGATA 299
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 240 TCAAGCATTAGGTTCCGACGAGTTAACTCCACCATACTTAGCACCAACAACAAGCGGATC 299
Query 300 TCTCATTCTTAATGGCGTTAATTATGCTTCTGGCGGAAGTGGAATCCTCAATTCTACGGG 359
||||||||| |||||||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct 300 TCTCATTCTCAATGGCGTTAATTATGCTTCGGGCGGAAGTGGAATTCTCAATTCCACCGG 359
Query 360 AAAAATATTTGGAGAGCGTATAAATGTGGATGCACAACTAGACAACTTTGCAACGACAAG 419
|||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAATTATTTGGCGAACGTATAAATGTGGATGCACAACTAGACAACTTTGCAACGACAAG 419
Query 420 ACGAGACATAATTTCTTGGATTGGTGAATCCGAAGCGGCTAAATTATTCCGGTCAGCAAT 479
|| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 420 ACAAGACATCATTTCTTGGATCGGTGAATCCGAAGCCGCTAAATTATTCCGGTCAGCAAT 479
Query 480 TTTCTCGGTTACGACCGGTTCAAACGATCTAATCAACAATTATTTCACCCCGGTGGTGTC 539
||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| | ||
Sbjct 480 TTTCTCGGTTACGACAGGTTCTAATGATCTAATCAACAATTATTTCACTCCGGTCATATC 539
Query 540 AACCGTTGAACGGAAAGTCAC-ATCTCCCGAAGTCTTCGTGGATACAATGATCTCAAGAT 598
|||| || |||||||||| | | |||| |||||||| || |||||||||||||||| ||
Sbjct 540 AACCCTTCAACGGAAAGT-AGTAGCTCCAGAAGTCTTTGTTGATACAATGATCTCAAAAT 598
Query 599 TCCGATTACAACTCACCAGATTGTACCAATTTGGTGCGAGGAAAATCGTGGTGATTAATA 658
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 TTCGATTACAACTCACCAGATTGTACCAATTGGGTGCGAGGAAAATCGTGGTGATTAATA 658
Query 659 TTGGTCCCATTGGTTGTATACCGTTCGAGAGAGAAACTGATCCAACGGCTGGAGATGAA- 717
|||||||||| ||||||||||| ||||||||||| |||||||| | |||||| || ||
Sbjct 659 TTGGTCCCATCGGTTGTATACCATTCGAGAGAGAGTCTGATCCAGCCGCTGGAAAT-AAC 717
Query 718 TGTTCGGTTGAACCAAATGAAGT-GGCACAAATGTATAATATCAAGCTTAAAACCCTAGT 776
|||| || ||||| ||||| || |||||||||||||||| | ||||| ||||| || ||
Sbjct 718 TGTTTGGCCGAACCTAATGAGGTTGGCACAAATGTATAATCTGAAGCTGAAAACACTCGT 777
Query 777 AGAGGATTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTACGCTGATGTTTTTCGCAT 836
||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 778 AGAAGAGTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTATGGTGACGTTTTTCGCAT 837
Query 837 TGTTTATGATATCCTACAAAATTATTCATCTTACGGTTTTGAAAGTGAGAAGATTCCGTG 896
|||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 838 TGTTGATGATATTATACAAAATTATTCATCTTACGGTTTTGAGAGTGAGAAGATTCCTTG 897
Query 897 TTGTTCATTACTTGGAAAAGTAGGTGGGCTTATTCCATGTGGTCCATCTTCAAAAGTATG 956
|||||| ||| |||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 898 TTGTTCGTTAGTTGGGAAAGTAGGTGGGCTGATTCCATGTGGTCCACCTTCAAAAGTATG 957
Query 957 TATGGATCGTTCCAAATATGTGTTTTGGGATCCTTACCATCC 998
|||||| |||||||||||||| ||||||||||||||||||||
Sbjct 958 TATGGACCGTTCCAAATATGTATTTTGGGATCCTTACCATCC 999
> AT4G16220.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr4:9182283-9183922 FORWARD LENGTH=645
Length=645
Score = 329 bits (178), Expect = 3e-89
Identities = 218/238 (92%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 1 ATGTCGTTGCTTGTTTTTCTTTTCCAAGTTATAGCTTTATCGGTCTTGTTCTTCTCCGAG 60
||||||| |||||||| || || |||||||||||| |||| |||||||||||| | || |
Sbjct 1 ATGTCGTCGCTTGTTTCTCGTTGCCAAGTTATAGCATTATTGGTCTTGTTCTTTTTCGGG 60
Query 61 GTGTGTCATGCCGGTAAAAACATTCCGGCGAATTTTGTGTTCGGAGATTCATTGGTGGAT 120
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGTGTCTTGCCGGTAAAGACATTCCGGCGAATTTTGTGTTCGGAGATTCATTGGTGGAA 120
Query 121 GCCGGAAACAACAACTACTTAGCCACATTGTCAAAGGCTAATTATGATCCTAATGGGATC 180
| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 121 GTCGGAAACAACAACTACTTAGCCACATTGGCAAAGGCTAATAATTTTCCTAATGGGATC 180
Query 181 GATTTTGGATCACCTACTGGGAGATTCACCAACGGAAGAACAATCGTCGATATCGTAT 238
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 181 GATTTTGGATCACCTACTGGTCGATTCACCAACGGAAGAACAATCGTCGATATCATAT 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5