BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355149

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16146.1 | Symbols:  | cAMP-regulated phosphoprotein 19-rela...   472    1e-132


> AT4G16146.1 | Symbols:  | cAMP-regulated phosphoprotein 19-related 
protein | chr4:9142404-9144583 REVERSE LENGTH=676
Length=676

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 291/309 (94%), Gaps = 0/309 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGACGGATTGCAACAGAGCCGACGATTTCTTGTTTTCACAGCAACAAGAGTCTACT  60
            ||| ||||||||||||| |||| | |||||||||||||||| ||||| ||||||||||||
Sbjct  109  ATGGCGACGGATTGCAATAGAGTCAACGATTTCTTGTTTTCTCAGCAGCAAGAGTCTACT  168

Query  61   TCTGGTGCAAATAAGTACGAAGGACTTGTGCCAAAGAAAAAGCCTCTTATCTCTAAGGAT  120
            |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct  169  TCTGGTGCAAATAAATACGGAGGACTTGTGCCAAAGAAAAAGCCTCTCATCTCTAAGGAT  228

Query  121  TCCAAACGTGCTTTCTTCGATTCAGCAGATTGGGCTTTACTCAAGCAAGAAGCAAGTATA  180
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  229  TCCAAACGTGCTTTCTTTGATTCAGCAGATTGGGCTTTACTCAAGCAAGAAGCAAGTATA  288

Query  181  GATCAGAGAACAATTGCGGCAATAGAGAAACTAAGACCCAAATTGCAGAGAACGCCTCGC  240
            |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  289  GATCAGAGAACAATAGCGGCAATAGAAAAACTAAGACCCAAATTGCAGAGAACGCCTCGC  348

Query  241  AAGCAACTTCCCCCTAGAAGACCCACATGTGCAACGGGACATGATAATCTGACAGAGTCG  300
            ||||||||| | ||||| |||||||||||||| |||||| |||| |||||||||||||||
Sbjct  349  AAGCAACTTTCTCCTAGGAGACCCACATGTGCGACGGGAAATGAGAATCTGACAGAGTCG  408

Query  301  AGCTTTTAG  309
            |||||||||
Sbjct  409  AGCTTTTAG  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5