BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355180
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38550.1 | Symbols: | Mannose-binding lectin superfamily pr... 263 1e-69
AT1G60130.1 | Symbols: | Mannose-binding lectin superfamily pr... 134 9e-31
AT5G38540.1 | Symbols: | Mannose-binding lectin superfamily pr... 93.5 2e-18
AT1G52100.1 | Symbols: | Mannose-binding lectin superfamily pr... 60.2 2e-08
> AT5G38550.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr5:15432781-15435779 REVERSE LENGTH=2074
Length=2074
Score = 263 bits (142), Expect = 1e-69
Identities = 309/387 (80%), Gaps = 22/387 (6%)
Strand=Plus/Plus
Query 26 TTAATGCTCTTGGAGCAAATTATCGTCCTATTCCT-CTGGCTCCTGCTG-CAATAAAACT 83
|||| |||||||||||| ||||||| || |||||| || |||||| || || || |||
Sbjct 1400 TTAAAGCTCTTGGAGCATATTATCGCCCGATTCCTCCT-ACTCCTGATGTGAA-AAGACT 1457
Query 84 AGAGGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGATGACGGTCGTAATTTTGA-AGGTG 142
||| ||| ||||||||||||||||||||||||||||||| ||| ||| ||| | || ||
Sbjct 1458 AGAAGCACAAGGTGGTGATGGAGGAGCTTCTTGGGATGATGGTGGTACTTTCAACAG-TG 1516
Query 143 TTAGAAAGATATTCATAGGACTAAGCGAAAACGCTATAGCCTTCGTCAAGTTTATGTACT 202
|||||||||| | ||| |||||| || |||||| | ||| ||| ||||||||| ||||||
Sbjct 1517 TTAGAAAGATCTACATTGGACTAGGCAAAAACGTTGTAGGCTTTGTCAAGTTTTTGTACT 1576
Query 203 ACAAAGACGCTCG-GATGGTC-TACGGAGATGATCATGGGAACAAGACC-TT--ATTTGA 257
||||| ||||||| | || || | ||||||||||||||| ||||||||| || || |||
Sbjct 1577 ACAAAAACGCTCGTGTTG-TCAT-CGGAGATGATCATGGCAACAAGACCCTTTCATCTGA 1634
Query 258 TGACAAAGAGTTCGAACTGAATTATCCAGTT-GAATATGTCACGTCAGTGGAGGGTAGTT 316
| | ||||||| || || || ||| ||| || ||| ||||||||||||| ||
Sbjct 1635 TCTCCTAGAGTTCTTGTTGGAT---CC-GTTTGAACATATCATATCAGTGGAGGGTACTT 1690
Query 317 ATGAAAATAAATCCGG-GGTTATAACCATGCTTAGGTTCAAGACCAACA-ACCAAACCTT 374
|||| ||| ||| || ||| |||||||||||||||||| |||||||| || ||| |
Sbjct 1691 ATGATGATACATCTGGAGGT-ATAACCATGCTTAGGTTCGAGACCAACTTACAAAAA-TC 1748
Query 375 TCCAGACATTGGAATCGGTACAACATC 401
|||| || ||||| | |||||||||||
Sbjct 1749 TCCATACTTTGGATTTGGTACAACATC 1775
> AT1G60130.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:22174179-22176321 FORWARD LENGTH=1803
Length=1803
Score = 134 bits (72), Expect = 9e-31
Identities = 265/355 (75%), Gaps = 25/355 (7%)
Strand=Plus/Plus
Query 78 AAAACTAGAGGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGATGACGGTCGTAATTTTGA 137
|||| |||| |||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 1365 AAAAGTAGAAGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGACGATGG-CGG--TTTTGA 1421
Query 138 AGGTGTTAGAAAGATATTCATAGGACTAAG-CGAAAACGCTATAGCCTTCGTCAAGTTTA 196
| |||||||||||| |||||||| | | ||| | | ||| || || || ||||||
Sbjct 1422 TTGCATTAGAAAGATATACATAGGAC-ACGGCGAGATGGGTATCGCATTTGTAAAGTTTC 1480
Query 197 TGTACTACAAAGACGCTCGGATGGTC-TACGGAGATGATCATGGGAACAAGACCTTATTT 255
| ||| |||| ||| | | | || | ||||||||||||||||| |||||| ||| ||
Sbjct 1481 TCTACGACAAGGACAATAAGTTCGTGGT-CGGAGATGATCATGGGAGCAAGACATTACTT 1539
Query 256 G-ATGACAAAGAGTTCGAACTGAATTATCCAGTTGAATATGTCACGTCAGTGGAGGGTAG 314
| | | | ||||| || || | |||||| |||||| | | || |||||||||||
Sbjct 1540 GGA-GTTGATGAGTTTGAGTTGGAGCATCCAGATGAATACCTGATATCTGTGGAGGGTAG 1598
Query 315 TTATGA---A--A-AT--AA---A-TCCGGGGTTATAAC-CATGCTTAGGTTCAAGACCA 361
|||||| | | || || | |||| |||||| | ||||||||||||||||||||
Sbjct 1599 TTATGATGTAGTAGATGGAAGTGAATCCGAAGTTATA-CTCATGCTTAGGTTCAAGACCA 1657
Query 362 ACAACCAAACCTTTCCAGACATTGGAATCGGTACAACATCTAGTTTCGA-ACTCG 415
| | | ||||| || || | ||||| ||| |||||||| || ||| | |||||
Sbjct 1658 ATATGCGAACCTCTCAAGTCTTTGGACTCGACACAACATCAAGCTTC-ATACTCG 1711
> AT5G38540.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr5:15426810-15428710 REVERSE LENGTH=1488
Length=1488
Score = 93.5 bits (50), Expect = 2e-18
Identities = 88/105 (84%), Gaps = 8/105 (8%)
Strand=Plus/Plus
Query 296 TCACGTCAGTGGAGGGTAGTTATGAAAAT-AAATCCGG-GGTTATAACCATGCTTAGGTT 353
|||| ||||||||||||| |||||| || |||| ||| || ||||||||||||||||||
Sbjct 1265 TCACATCAGTGGAGGGTACTTATGATGATAAAAT-CGGAGG-TATAACCATGCTTAGGTT 1322
Query 354 CAAGACCAACAACCAA-ACCTTTCCAG-ACATTGGAATCGGTACA 396
|||||||||||| || || | ||| | || ||||| ||||||||
Sbjct 1323 CAAGACCAACAAAAAAGAC-TCTCC-GTACTTTGGATTCGGTACA 1365
> AT1G52100.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19383122-19385533 REVERSE LENGTH=1554
Length=1554
Score = 60.2 bits (32), Expect = 2e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 334 GTTATAACCATGCTTAGGTTCAAGACCAACAA 365
||||||||||||||||||||||||||||||||
Sbjct 1215 GTTATAACCATGCTTAGGTTCAAGACCAACAA 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21715667568
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5