BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355185
Length=3462
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15810.1 | Symbols: | P-loop containing nucleoside triphosp... 1256 0.0
> AT4G15810.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:8989162-8992591
REVERSE LENGTH=2757
Length=2757
Score = 1256 bits (680), Expect = 0.0
Identities = 937/1059 (88%), Gaps = 26/1059 (2%)
Strand=Plus/Plus
Query 733 GAAGAGGTGAGAATGAACTATTCAGATGAATTTGATGATGGTTTAG-TGTCCTTTGGGAA 791
||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||
Sbjct 424 GAAGAGGTGAGAATGAACTATTCAGATAAATTAGATGATGGTTT-GATGTCCTTTGGGAA 482
Query 792 TAGTGAAGAATCGAGTCTCGGTGTTGTTCCACCAGGAGGTTTTAATGATTTTAAGGCAGA 851
|| ||||||||| |||||| | | ||||||||||| ||||| || |||||||| ||||||
Sbjct 483 TATTGAAGAATCAAGTCTC-G-G-TGTTCCACCAGAAGGTTCTAGTGATTTTATGGCAGA 539
Query 852 AACTGAAGGGAACTCTATTGAGGCAAGTATGGAAGTGGGTCAAAGTTTCAAGCAACTTTT 911
|| |||||||||||||| |||||| ||||| ||| ||||||||| |||||||||||| |
Sbjct 540 AAATGAAGGGAACTCTAGTGAGGCGAGTATAGAATTGGGTCAAAATTTCAAGCAACTCAT 599
Query 912 GGAGACTGGGG-TTGTTCAAAGAACCATCATCAAGGAGGAT-GGGAGTGGTAGCAATAAT 969
|||| |||| | | | |||| ||||||| |||||||||| | | ||||||||| | ||
Sbjct 600 CGAGAAAGGGGATAG-TAAAAGTACCATCAACAAGGAGGATAGTG-GTGGTAGCATTCAT 657
Query 970 GAATTCGACGCATTGATGATA-TTAAATGATGCAGAAAGAGTAGAAGATAGTGCAGTTGA 1028
||||| ||||||||||||| | || ||||| |||||||||||||||||||||||||||
Sbjct 658 GAATTTGACGCATTGATGA-AGCCAAGTGATGTAGAAAGAGTAGAAGATAGTGCAGTTGA 716
Query 1029 ATTAGTAGAAATGGTAATGACTGATAAACCAGAATACGTAGGTTCTAATACAGGTGAACT 1088
||||| | |||||| ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 717 ATTAGCAAAAATGGGAATGAATGATAAACCAGAATACGCAGGTTCTAATATAGGTGAACT 776
Query 1089 TGTTTCGAAAGAGGAAGATATGGTACAAGAGAAATCTTCTGACGGTGGGTTGGTGTCCTT 1148
||| || | |||||||| ||||||||||||||||||||||||| || ||| ||||| ||
Sbjct 777 TGTATCCATAGAGGAAGTTATGGTACAAGAGAAATCTTCTGACAATGTGTTAGTGTCTTT 836
Query 1149 TGCGAGTAGTCTTGGTGTTGTGACAGGTGATTGCAATGAGTTTCTGGTGGAAAGTGAAGG 1208
|| |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 837 TGAGAGTAGTCTTGGTGTTATGACAGGTGAATGCAAGGAGTTTCTGGTGGAAAGTGAAGG 896
Query 1209 AAACGCTGTTGATGAGGATAAAGGATTAGATGAAACTGTCACTGTCAGCAGCCTTGTCGA 1268
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 897 AAACGCTGTTGATGAGGATAAAGGATTAGATGAAACTGT-A-----AGCAGCCTTGTCGA 950
Query 1269 ACAAGGGGTGGTTGTGGGTCAAGGAAGTACCAGCAAGGAGAGCAATAACAGAACTCATGT 1328
||||||||||| || |||| |||||||||||||||||||||||||||||| ||||
Sbjct 951 ACAAGGGGTGG--GT----CAAGCTAGTACCAGCAAGGAGAGCAATAACAGAACTGATGT 1004
Query 1329 TGGGAGTGCCTGTGAAGCAGATGAATTGATGATTCCAGGTAACGGGTCTATTGGATCAGA 1388
||| |||| |||||| |||||||||||||| |||||| || ||| |||||||||||||||
Sbjct 1005 TGGTAGTGTCTGTGATGCAGATGAATTGATAATTCCACGTGACGAGTCTATTGGATCAGA 1064
Query 1389 AAGCAGAGACTCATGGGATGAAGACGCTGGAAATATGATAGGTGAGGCAAAAGAACACTG 1448
||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 1065 AAGCAGAGACTCAGGGGATAAAGACGCTGGAAATATGATAGGCAAGGCAGAAGAACACTG 1124
Query 1449 TGGAAATGATTGTGGTGCTGTTTGCGAATTAGAAAAAACT-GAATGTGAGGGCGGACCTG 1507
|| ||||||| ||||||||||| |||||||||||||| || || || | || | |||||
Sbjct 1125 TGAAAATGATCGTGGTGCTGTTAGCGAATTAGAAAAA-CTTGAGTGCGCGGATGAACCTG 1183
Query 1508 AAGTTGTTATGAGCTCTGAAAGTGTTCAGTTAACTCCCCCTCCGGATTCTGAAACGACGA 1567
|| ||| |||||| ||||||||| ||||||||||||| || | |||||||||| || |
Sbjct 1184 AAATTGGTATGAGTTCTGAAAGTTTTCAGTTAACTCCAACTTCAGATTCTGAAATGATAA 1243
Query 1568 GGAACCTTGAGGACGCTGGAGGAATAGATGTCGCTGTAAGTGGGTGTGGTTCTTCTGATC 1627
||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||| ||||
Sbjct 1244 TGAACCTTGAGGTCGCTGGAGGAATAGATGTCGTTGTAATTGGTTGTGGTTCTTCCGATC 1303
Query 1628 GAAAAGCTGAACAAGAATCTGAAAATGAAGGAAATCAAGAATCAGACGATACTGATAGGA 1687
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AAAAAGCTGAAGAAGAATCTGAAAATGAAGGAAATCAAGAATCAGACGATACTGATAGGA 1363
Query 1688 AGTTATCACTTCCTGATGAAGATAGAGCATCAAGTTTAAGAAGTTCCTTTGAAACAGCCA 1747
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1364 AGTTGTCACTTCCTGATGAAGATAGAGCATCAAGTTTAATAAGTTCCTTTGAAACAGCCA 1423
Query 1748 ATGAGACTGTGGAAGATGGGAAGCAGATTAATAAGCAGG 1786
|||||||||||||||||||||| || |||||||||||||
Sbjct 1424 ATGAGACTGTGGAAGATGGGAATCA-ATTAATAAGCAGG 1461
Score = 826 bits (447), Expect = 0.0
Identities = 583/649 (90%), Gaps = 7/649 (1%)
Strand=Plus/Plus
Query 1873 ACCATGCCTGAAAACTCTTCGGTAATTGGTTATGATATAATGGAAAATGATACGCGGATG 1932
|||||||||||||||||||| ||||||| ||||||||||||||||||||| | | ||||
Sbjct 1462 ACCATGCCTGAAAACTCTTCCGTAATTGCTTATGATATAATGGAAAATGAGA--C-GATG 1518
Query 1933 GCACCGCTGATTCACAATCACACGTTTGTGAAGCTTGACGAGTACGAAGGAACATGTGAT 1992
|||| ||||||||| |||||||| ||| || ||||||||||||||||||||||| |||||
Sbjct 1519 GCACGGCTGATTCATAATCACACTTTTATGGAGCTTGACGAGTACGAAGGAACAGGTGAT 1578
Query 1993 ACAAGGGAGAGACTCTCTGAATCCAGTTTCCAGAATTATTCTGAAGTATTATGCTCTGAT 2052
||||| |||| |||| ||| ||||||||||||||||| ||| ||| |||||| |||| ||
Sbjct 1579 ACAAGTGAGAAACTCACTGGATCCAGTTTCCAGAATTCTTCAGAACTATTATCCTCTAAT 1638
Query 2053 CATTCTGTGCAGCTGATAAGTGAGAAAGTGAAAGAGAGAGTTGAGAAGACCCAGCTCTTG 2112
||||||||| ||||||||||||||| |||||| || |||||||||||||| |||||||||
Sbjct 1639 CATTCTGTGGAGCTGATAAGTGAGAGAGTGAAGGAAAGAGTTGAGAAGACTCAGCTCTTG 1698
Query 2113 AAAGAAAAGCTCCAGAGGATTATAAGAAGAACA-GATCTTTGCAGTGAAAATTTAACTGT 2171
|| |||||||||||||||||||||||||||||| | |||| || ||||||||| ||||||
Sbjct 1699 AAGGAAAAGCTCCAGAGGATTATAAGAAGAACATG-TCTTAGCCGTGAAAATTCAACTGT 1757
Query 2172 TACTGAAGTTGAGTCTAAGCTGAGCATAGCTGGTGGAGAACATCAAACGACCTTAGGGCT 2231
|||| |||||| ||||||| ||||| |||||||||||||||||| |||| ||||||||||
Sbjct 1758 TACTAAAGTTGCGTCTAAGATGAGCCTAGCTGGTGGAGAACATCCAACGTCCTTAGGGCT 1817
Query 2232 GGATAACGTGTCTGATAGAACAAAGATAATGCTGCCTGAACATGAGTTTCCAGATGATCT 2291
||| || ||| ||| ||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 1818 TGATCACATGTTTGACGGAACAAAGATAGTGCTGCCTGAACAAGAGTTTCCAGCTGATCT 1877
Query 2292 AGACTTCTCCATTAATGTCCTTGTTATCGGGAAAACCGGGGTGGGAAAAAGTGCAACGGT 2351
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1878 AGACTTCTCCATTAACGTCCTTGTTATCGGGAAAACTGGGGTGGGAAAAAGTGCAACGGT 1937
Query 2352 TAATTCTATATTTGGGGAGAC-AAAGTCTCCTGTTGGTGCATTTGGAGTTACCACCAAGT 2410
||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||||| || |
Sbjct 1938 TAATTCTATTTTTGGGGAGACTAAA-TCTGCTGTTGGTGCATTTGGAGTTACCACTAACT 1996
Query 2411 CTGAAAATTACGTGGTTGGGAATGTAGGAGGAATCCTGATAAGAATACTGGATACGCCAG 2470
||| |||||| || |||||||||||||||||||||| |||||| ||||| ||||||||||
Sbjct 1997 CTGCAAATTATGTTGTTGGGAATGTAGGAGGAATCCAGATAAGTATACTTGATACGCCAG 2056
Query 2471 GTCTCATGTCCTCTGCATCTGAGGAACAGTTGAATCTGGAAGTCCTTAT 2519
| ||| ||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct 2057 GACTCTTGTCCTCTGCAACTGAGGAACAGTTTAATCAGGAAGTCCTTAT 2105
Score = 634 bits (343), Expect = 2e-180
Identities = 569/670 (85%), Gaps = 47/670 (7%)
Strand=Plus/Plus
Query 2785 AGCAAGATGCCT-GGAATTGTGCTGGCAGAGAACAACATGAGC-TCTTTCTCCACAAACA 2842
|||||||||||| |||||||| ||||||||||||||||||||| || |||||| ||||||
Sbjct 2106 AGCAAGATGCCTAGGAATTGTTCTGGCAGAGAACAACATGAGCTTC-TTCTCCGCAAACA 2164
Query 2843 AAAGAAGCGAATCTACATGTCCGGACTGGAGATTGAACTTGCTGATCTTATGTTGTTCAG 2902
|||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct 2165 AAAGCAGCGAATCTACATGTTCGGATTGGAGATTGAACTTGCTGATCTTATGTTGCTCAG 2224
Query 2903 TTAAGATCCGGTCAAAAGCCGGTT-TATTGCAAAAGCAGATTACCGTTGTAGAAAAGGCC 2961
||||||||||||| |||||||||| | ||||||||||||| ||||| |||||||||||||
Sbjct 2225 TTAAGATCCGGTCTAAAGCCGGTTCT-TTGCAAAAGCAGAATACCGATGTAGAAAAGGCC 2283
Query 2962 GATGTATTTGGCAGCCAGCTTCA-CTCATTT-ACTCTATTCTGTTCCTTGTGGAATGTGT 3019
| ||| |||||| ||||||| | ||| ||| ||||||||||||||||||||||||||||
Sbjct 2284 GGTGTCTTTGGCTCCCAGCTT-AGCTC-TTTCACTCTATTCTGTTCCTTGTGGAATGTGT 2341
Query 3020 TGCTTCTTGGGGCTAACTCAGGGCACACTTCTCATTCACATGATGATTTGGAGGAGAAGA 3079
| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2342 TACTT---------AACTCAGGGCACACTTCTCATTCACATGATGATTTGGAGGAGAAGA 2392
Query 3080 AAAGGCAGTTAATGGATTCTTACCCTAAAATCATCTGGGACGAACAGAGTCAAGAATGTC 3139
||||| | ||| |||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 2393 AAAGGAAATTACTGGATTCTTACCCTGAAATTATATGGGACGAACAGAGTCAAGAATGTC 2452
Query 3140 TCGAGCAAAGAGAGAGT-CAAGAACCAGAAGACCAGGAGAGGCGAGATGAAAAAGGAAAA 3198
|||||||| || | | | | | |||| | || | | | ||| || ||| |
Sbjct 2453 TCGAGCAA-GAAACACTTCTCGTGG-AGAAT-CAAG-A-AT-C-AGAAGACGT-GGAGAG 2504
Query 3199 ACAAACAGAGGCTTGGAAGAAGTAACTGTTCGTGGTCGTAT--GA----GAAGAGGAAGA 3252
|||| || | | || ||| |||||| | ||||||| | || |||||||||||
Sbjct 2505 ACAA-CA-----T-GAAA-AAGGAACTGTACTTGGTCGTGTAAGAACCAGAAGAGGAAGA 2556
Query 3253 CTTGGGTTCCAAGCAACAAAAAGGTTCGGTATCTATCTCGATACATCTGATTTGCACACC 3312
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 2557 CTTGGATTCCAAGCAACAAAAAGGTTCGGTATCTATCTAGATACATCTGATGTGCACGCA 2616
Query 3313 GGGTTCTCCATTGGAAGTCGAGGCTGTAGAAAGAAC-G-AGCAAGAAGAAGG-AAGGATC 3369
||||| ||||||||||| |||| |||||||| ||| | | ||||||||||| ||| |||
Sbjct 2617 GGGTTTTCCATTGGAAGCCGAGACTGTAGAA-GAAATGTA-CAAGAAGAAGGGAAG-ATC 2673
Query 3370 TTGGTGAGGATGAGAGGCTCAATGTCTGTTTTAGGTTTGGTTCCTATGTTGATGTCCGTT 3429
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2674 TTGGTGAGGATGAGAGGCTCCATGTCTGTTTTAGGTTTGGTTCCTATGTTGATATCCGTA 2733
Query 3430 TTCACTTCTG 3439
||||||||||
Sbjct 2734 TTCACTTCTG 2743
Score = 220 bits (119), Expect = 6e-56
Identities = 174/198 (88%), Gaps = 14/198 (7%)
Strand=Plus/Plus
Query 197 CAAGTAGTGAAGCTAGTAGTTACAGTAATGGACTTGATTTTGAGACTGATGAAGATGAGA 256
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 131 CAAGTAGTGAAGCTAGTAGTTATAGTAATGGACTTGATTTTGAGACTGATGAAGATGAGA 190
Query 257 CTGAGGAGTTAGAGGATGTGATTTTGGGTGGGGTTAGGGTTGATAGGCTACTAGGGGAAG 316
||| | |||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 191 CTGTG---TTAGAGGATGTGGTTTTGGATGGGGTTAGGGTAGATAGGCTACTAGGGGAAG 247
Query 317 AGTTCGGTGGAGAGATTGGAGATGAAAGTGAGTTTTCAGGTGGGAGTGTGATTTATAGAC 376
|||| |||||||| | ||| | | ||| ||| |||||||||||| |||||||||||
Sbjct 248 AGTTAGGTGGAGA--T-GGA-A-G----TGAATTT-CAGGTGGGAGTGGGATTTATAGAC 297
Query 377 CATTTGCTG-GTGATGTT 393
||||||| | |||| |||
Sbjct 298 CATTTGCAGAGTGAAGTT 315
Score = 176 bits (95), Expect = 1e-42
Identities = 107/113 (95%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 472 AGTGAAGTTAGTGAAGGTGAAAGAGGTAGCATGAAAGCAAAAGTTGTCATTCCTCGTGCT 531
||||||||||||| || |||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 307 AGTGAAGTTAGTGGAGATGAAAGAGGTAGTATGAAAGCAAAAGTAGTCATTCCTCGGGCT 366
Query 532 GTTTTGTCTTTGGATGATGATGAGTTTGATGAAATTTTGGGTAGTGATGATGA 584
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 GTTTTGTCTTTGGATGATGATGAGTTTGATGAAATTTTGGGTAGTGATGTTGA 419
Score = 132 bits (71), Expect = 3e-29
Identities = 109/125 (87%), Gaps = 12/125 (10%)
Strand=Plus/Plus
Query 1 ATGGAGTCGGAGAAGCCTGGGATTGTTTCAA-T-T--CT----C-AC-G--GATTCGGAG 48
||||| ||||||||||||||||||||||||| | | || | || | |||||||||
Sbjct 1 ATGGAATCGGAGAAGCCTGGGATTGTTTCAATTCTCGCTGCAGCAACGGTCGATTCGGAG 60
Query 49 AAACCTCGCGTTTCAATTTCCGCGGTTAGAGCGGTTGCGGCGGCAAGAGCTGATTCGTTT 108
|||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 61 AAACCTCGCGTTTCAATTTCTGCGGTGAGAGCGATTGCGGCGGCAAGAGCTGATTCGTTT 120
Query 109 CTTCT 113
|||||
Sbjct 121 CTTCT 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 172323449205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5