BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355191
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15765.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1153 0.0
> AT4G15765.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr4:8975404-8977211 REVERSE LENGTH=1195
Length=1195
Score = 1153 bits (624), Expect = 0.0
Identities = 722/769 (94%), Gaps = 7/769 (1%)
Strand=Plus/Plus
Query 463 GTTTTGATTGGCTGCGATGGATCAAATTCTGTAGTCTCTAGATTTCTAGGACTAAACCCG 522
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 337 GTTTTGATTGGCTGCGATGGGTCAAATTCTGTAGTCTCTAGATTTCTAGGATTAAACCCG 396
Query 523 ACTAAAGACCTCGGTTCGCGGG-CAGTCAGAGGGTTCACAAATTACCCGGACGACCATGG 581
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 397 ACTAAAGACCTCGGTTCGCGGGCCA-TCAGAGGGTTCACAAATTACCCGGACGACCATGG 455
Query 582 ATTCCGGCAAGAGTTTATAAGAATCAAGATGGACAACGTCGTAAGCGGACGAATTCCTAT 641
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 456 ATTCCGACAAGAGTTTATAAGAATCAAGATGGACAACGTCGTAAGCGGACGACTTCCTAT 515
Query 642 AACTCACAAACTCGTCTTTTGGTTTGTTGTTTTGCTTAACTGTCCCCAAGACTCAAGCTT 701
||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 516 AACTCACAAACTCGTCTTTTGGTTTGTTGTTTTGCGAAATTGTCCCCAAGACTCAAACTT 575
Query 702 TTTAAGAAATCAAGCGGATATCGCAAGATTGACACTAGCATCGGTCCACGAATTCTCTGA 761
|||| |||||||| |||||||||||||||| |||||||||| |||| ||||||||| ||
Sbjct 576 CTTAAAAAATCAAGAGGATATCGCAAGATTGGCACTAGCATCAGTCCGCGAATTCTCAGA 635
Query 762 AGAGTGGAAAGAGATGGTGAAGAACTGTGATATGGACTCTTTGTATATCAACCGTTTAAG 821
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 636 AGAGTGGAAAGAGATGGTGAAGAATTGTGATATGGACTCTTTGTATATCAACCGTTTAAG 695
Query 822 GTACCGTGCTCCTTGGGATGTTCTGTCCGGTAAATTCCGATGTGGCACTGTGACAGT-GG 880
||||||||||||||||||||||||||| || ||||||||| ||||||| |||||||| ||
Sbjct 696 GTACCGTGCTCCTTGGGATGTTCTGTCTGGAAAATTCCGACGTGGCACCGTGACAGTTGG 755
Query 881 CCGGAGACAGTATGCACCTAATGGGTCCATTCATAGGACAAGGATGTTCGGCTGCACTTG 940
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 756 CCGGAGACAGTATGCACCTAATGGGCCCATTCTTAGGACAAGGATGTTCGGCTGCGCTTG 815
Query 941 AGGACGGTGTTGTTTTGGCTAGATGCTTGTGGAGGAAGTTATCTTTAGGTCAAGACGGTA 1000
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 816 AGGACGGTGTTGTTTTGGCTAGATGCTTGTGGAGGAAGTTAAATTTAGGTCAAGACGGTA 875
Query 1001 TGAAT-AATGTCTCTTACTCCTCTTCAAGGATGCAAATAGAAGAAGCGATTGATGAGTAC 1059
| ||| ||||| |||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 876 T-AATTAATGTATCTTCCTTCTCTTCAAGGATGCAAATAGAAGAAGCAATTGATGAGTAC 934
Query 1060 ATTAGGGAAAGAAGAGGGAGACTCGTGGGGCTTTCGACGCAAACATATCTTACCGGTAAT 1119
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| |
Sbjct 935 ATTAGGGAAAGAAGAGGTAGACTCGTGGGGCTTTCGACACAAACTTATCTTACCGGTAGT 994
Query 1120 TTAATCAA-AGCTTCTTCGCCGGTTACGAAGTTCTTGCTTGTAGTTTTGTTGATGATTCT 1178
||||| | ||||||||||||||||| |||| | |||||||||||| |||||||||||||
Sbjct 995 TTAAT-AGCAGCTTCTTCGCCGGTTAGGAAGCTATTGCTTGTAGTTATGTTGATGATTCT 1053
Query 1179 GTTTCGTGATCAAATTGGTCATACTCGATATGATTGTGGCCGTCTTTAA 1227
|||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1054 GTTTCGTGATCAAATTGGTCATACTCGATATGATTGTGGCAGTCTATAA 1102
Score = 324 bits (175), Expect = 1e-87
Identities = 193/202 (96%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 219 GATAAGAGATGTTTTGATCGAGAAAGGGATTAAACAAAGAGAATCGGTTGGACCGGCGTC 278
||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || ||
Sbjct 138 GATAAGAGATGTTTTGATCGAGAAAGGTATTAAACGAAGAGAATCGGTTGGACCAGCATC 197
Query 279 GTATGGAGAAGTAAGAGGTGTACTAAGGAACGATTTGGTCCGAGCTTTGGCTCATGCTCT 338
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 198 CTATGGAGAAGTAAGAGGTGTACTAAGGAACGACTTGGTTCGAGCTTTGGCTCATGCTCT 257
Query 339 TCCTCTTGGCACTCTCCGGCTTGGTTGCCATATTTTGTCGGTTAAGCTCGACGAAACAAC 398
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TCCTCTTGGCACTCTCCGGCTTGGTTGCCATATTTTGTCGGTTAAGCTCGACGAAACAAA 317
Query 399 ATCGTTTCCGATTGTACACGTT 420
||||||||||||||| ||||||
Sbjct 318 ATCGTTTCCGATTGTGCACGTT 339
Score = 228 bits (123), Expect = 1e-58
Identities = 131/135 (97%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAATTGGACATAGTAATCGTGGGAGGAGGCATTGCTGGTCTTGCAACTTCCCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAATTGGACATAGTAATCGTGGGAGGAGGCATTGCTGGTCTTGCAACTTCCCTT 60
Query 61 GCTCTTCACAGGAAGGGTATAAAGAGCATTGTGTTGGAGAGAGCAGAGTCAGTAAGATCG 120
||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 61 GCTCTTCACAGGAAGGGCATAAAGAGCGTTGTGTTGGAGAGATCAGAGTCTGTAAGATCG 120
Query 121 GAAGGAGCAGCATTT 135
|||||||||||||||
Sbjct 121 GAAGGAGCAGCATTT 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5