BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355195
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15750.1 | Symbols: | Plant invertase/pectin methylesterase... 473 6e-133
> AT4G15750.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:8967554-8968604 REVERSE
LENGTH=721
Length=721
Score = 473 bits (256), Expect = 6e-133
Identities = 442/527 (84%), Gaps = 31/527 (6%)
Strand=Plus/Plus
Query 1 ATGACTAATCCCATGATCAAGGTTATGCTATTGTTGTTTCTTGTGTTGTCGATTCGAGCA 60
||||||||||||||||||| ||||||||| ||||||||||||||| |||||| | |||||
Sbjct 57 ATGACTAATCCCATGATCATGGTTATGCTGTTGTTGTTTCTTGTGATGTCGACTAGAGCA 116
Query 61 GACGAAGAGCTGATGAAGAAAGAGTGTAGTCAGACAGGGA-ACCAAAACTTATGCCTCTT 119
|||||||||||||| |||| |||||||| ||| ||| | | |||||||| ||||||||||
Sbjct 117 GACGAAGAGCTGATTAAGACAGAGTGTAATCACACA-GAATACCAAAACGTATGCCTCTT 175
Query 120 TTGTCTTGAATCTGACCCAATCTCCTACCAA-ACCGACCGTGCTGGA-TTCGTCAGCATC 177
||||||||| | || |||||||||| ||| | ||||||||||||| || |||| ||||
Sbjct 176 CTGTCTTGAAGCCGATCCAATCTCCT-TCAATATCGACCGTGCTGGACTT-GTCAACATC 233
Query 178 ACTATACACTGTCTCGAATCTCAACTTGATATTCTCATCAACGA-CGTCACGAGTCT--- 233
| |||||||||||||| ||||||||||||| |||| |||||| | ||||||||||||
Sbjct 234 ATTATACACTGTCTCGGATCTCAACTTGATGTTCTTATCAAC-ACCGTCACGAGTCTAAA 292
Query 234 GTCGATGAAAGGAGAGGGTGAAG-AAATTGAGAATGTTCTGGAAGATTGCAACGTAAACT 292
|| |||||||||||||||||||| ||| ||||||||||||| |||||||| | | ||
Sbjct 293 GTTGATGAAAGGAGAGGGTGAAGCAAA-TGAGAATGTTCTGAAAGATTGCGTCACAGGCT 351
Query 293 TTTCGATTGCAAAATTAC-ACCTT--AGCGAAGCCAAAGA-CAAGTTGGTAACCCTTAAT 348
|| |||||||| |||||| | ||| || | |||| || | | | ||| |||||||||||
Sbjct 352 TTGCGATTGCACAATTACGA-CTTCAAG-G-AGCC-AACATCGATTTGATAACCCTTAAT 407
Query 349 AACGAGAAAGCCTTCGGATTGGTGAAAACTTCGGTT-AGCTATCTTCAGACTTGCAG-AG 406
|||| ||||| | || ||||||||||||| | ||| | ||||| || ||||||| | ||
Sbjct 408 TACGATAAAGCGTACGAATTGGTGAAAACTGC-GTTAAACTATCCTCGGACTTGC-GAAG 465
Query 407 GAAATCTCCAAAAAATCAAGTTCAACGAGTCA-CATGATGTTTATGACGATATCGATGTC 465
||||||||||||| |||||||||| || ||| | ||||||||||||||||||| || |
Sbjct 466 AAAATCTCCAAAAACTCAAGTTCAAAGATTCATC-TGATGTTTATGACGATATC-TTGGC 523
Query 466 -TAT-GTCGACCTCTCCTCTGTTGCTAAGACGTTGATCCACCGTCTC 510
||| | | | ||| ||||||||||||||||||||||||||||||||
Sbjct 524 ATATAG-CCAACTCACCTCTGTTGCTAAGACGTTGATCCACCGTCTC 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5