BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355235
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15440.1 | Symbols: HPL1, CYP74B2 | hydroperoxide lyase 1 | ... 2111 0.0
> AT4G15440.1 | Symbols: HPL1, CYP74B2 | hydroperoxide lyase 1
| chr4:8835495-8838676 FORWARD LENGTH=1743
Length=1743
Score = 2111 bits (1143), Expect = 0.0
Identities = 1362/1467 (93%), Gaps = 18/1467 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTG-CTTCCCCGCGGTCACCACCGTCAACACCCCTATCATCGCAGCAGCCTCC 59
|||||||| | ||||||||||| |||||||||||||| ||||| |||| |||||||| ||
Sbjct 76 ATGGCGGC-GACTTCCCCGCGGCCACCACCGTCAACATCCCTAACATCTCAGCAGCCACC 134
Query 60 GTCATCCCCGTCGCAGCTTCCCCTCCGTACAATGCCGGGATCGTACGGTTGGCCGGTT-G 118
||| |||| || ||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 135 ATCACCCCCCTCACAGCTTCCCCTCCGTACAATGCCGGGATCGTACGGCTGGCC-GTTGG 193
Query 119 TTGGACCTTTGTCGGACCGTTTAGATTACTTCTGGTTCCAAGGACCCGATAAGTTTTTCC 178
||||||| || ||||||||||||| | |||||||||||||||||||||||||
Sbjct 194 TTGGACCATTATCGGACCGTTTAG---A-------TTCCAAGGACCCGATAAGTTTTTCC 243
Query 179 GGACAAGGGCTGAAAAGTACAAGAGCACTGTGTTCCGTACAAACATTCCTCCGACGTTTC 238
||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 244 GGACAAGAGCTGAGAAGTATAAGAGCACTGTGTTCCGTACAAATATTCCTCCGACGTTTC 303
Query 239 CTTTCTTTGGCGACGTTAACCCTAACATTGTCGCCGTTCTCGACGTCAAGTCTTTTAGCC 298
||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 304 CTTTCTTCGGCAACGTTAACCCTAACATCGTCGCCGTTCTTGACGTCAAGTCTTTTAGCC 363
Query 299 ATCTCTTTGACATGGATCTGGTTGATAAAAGAGATGTTCTCATTGGAGACTTCCGGCCTA 358
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 364 ATCTTTTTGACATGGATCTAGTTGATAAAAGAGATGTTCTCATCGGAGACTTCCGGCCTA 423
Query 359 GCCTTGAGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTTGACACTACCGAGCCAAAGC 418
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 424 GCCTTGGGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTCGACACTACTGAGCCAAAGC 483
Query 419 ACGCCAAGATAAAAAGTTTCACTATGGAAATACTAAAACGAAGCTCAAAAGTATGGCTAC 478
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 484 ACGCCAAGATAAAAGGTTTCGCTATGGAAACACTAAAACGAAGCTCAAAAGTATGGCTAC 543
Query 479 AAGAGCTTCGTTCAAACCTAAACACTTTCTGGGGAACAATCGAATCCGAAGT-TACCAAA 537
|||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||
Sbjct 544 AAGAGCTTCGTTCAAACCTAAACATTTTCTGGGGAACAATCGAATCCGAAATCT-CCAAA 602
Query 538 AACGGCGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGTGCC 597
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 603 AACGGTGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGCGCC 662
Query 598 TCTCTCGCCGGCGTTGACGTTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACA 657
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCTCTCGCCGGCGTTGACGCTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACA 722
Query 658 CTCAATACTTGGCTTGCATTGCAAGTTATCCCCACCACTAAACTCGGCATTGTTCCTCAG 717
|||||||||||||||| ||||||||||| ||||| ||||||| ||| | |||||||||
Sbjct 723 ATCAATACTTGGCTTGCGTTGCAAGTTATTCCCACTGCTAAACTTGGCGTAGTTCCTCAG 782
Query 718 CCGCTTGAAGAGATTTTTCTCCATACTTGGCCTTACCCTTCTCTCTTAGTCGCCGGAAAT 777
|| |||||||||||||| || |||||||||||||| |||||||||||| |||||||||||
Sbjct 783 CCTCTTGAAGAGATTTTACTTCATACTTGGCCTTATCCTTCTCTCTTAATCGCCGGAAAT 842
Query 778 TACAAAAAGCTTTGCAATTTCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTCAA 837
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TACAAAAAGCTTTACAATTTCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTCAA 902
Query 838 GAAGAATTCGGGTTGACCCGAGATGAGACGATTCAGAATCTTTTATTCGTGTTGGGTTTT 897
||||||||||||||||||||||||||| | ||||| |||||| | || || || ||||||
Sbjct 903 GAAGAATTCGGGTTGACCCGAGATGAGGCTATTCAAAATCTTCTCTTTGTTTTAGGTTTT 962
Query 898 AACGCTTACGGGGGCTTTTCCGTCTTTTTACCTTTTTTGATCGGAAAAATCACCGGCGAT 957
|| || |||||||||||||||||||| ||||||| ||||||||| | ||| ||||||||
Sbjct 963 AATGCCTACGGGGGCTTTTCCGTCTTCTTACCTTCTTTGATCGGGAGAATAACCGGCGAC 1022
Query 958 AATTCCGGTCTCCAGGAGAGGATTA-AATCCGAAGTCAGGAGAGTTTGCGGATCCGAGTC 1016
||||||||| | ||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 1023 AATTCCGGTTTACAGGAGAGGATTAGAA-CCGAAGTCAGGAGAGTTTGCGGATCCGGGTC 1081
Query 1017 GGATCTTAATTTCAAGACGGTCAACGAAATGGAGCTGGTTAAATCGGTGGTTTACGAAAC 1076
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1082 GGATCTTAATTTCAAGACGGTTAACGAAATGGAGCTGGTTAAATCCGTGGTTTACGAAAC 1141
Query 1077 GCTGCGTTTTAATCCTCCGGTTCCTTTGCAATTCGCACGTGCGAGGGAAGATTTTCAGAT 1136
||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1142 GCTGCGTTTTAGTCCTCCGGTTCCGCTGCAATTCGCACGTGCGAGGAAAGATTTTCAGAT 1201
Query 1137 AAGTTCACACGATGCTGTTTTTGAGGTTAAGAAAGGTGAGCTTCTTTGTGGTTACCAGCC 1196
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1202 AAGTTCACACGATGCTGTTTTTGAGGTCAAGAAAGGTGAGCTTCTTTGTGGTTATCAGCC 1261
Query 1197 GCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTT 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTA 1321
Query 1257 TGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTCCACAAAC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTCCACAAAC 1381
Query 1317 AGGTACACCGAGCGCTTCGAACAAACAGTGTGCAGCTAAGGACATGGTCACTCTCACGGC 1376
||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1382 CGGTACCCCGAGCGCGTCGAACAAACAGTGTGCAGCTAAGGACATTGTCACTCTCACGGC 1441
Query 1377 TAGCTTGGTCATTGCCGATTTATTTCTCCGGTATGATTCGGTTACTGGCGACTCCGGTTC 1436
| |||| || |||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 1442 TTCCTTGCTCGTTGCCGATTTATTTCTCCGGTATGATACGATTACTGGTGACTCCGGTTC 1501
Query 1437 AATTAAAGCTGTTGTTAAAGCTAAATA 1463
|||||||||||||||||||||||||||
Sbjct 1502 AATTAAAGCTGTTGTTAAAGCTAAATA 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5