BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355248
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15310.1 | Symbols: CYP702A3 | cytochrome P450, family 702, ... 481 4e-135
> AT4G15310.1 | Symbols: CYP702A3 | cytochrome P450, family 702,
subfamily A, polypeptide 3 | chr4:8736721-8740047 FORWARD
LENGTH=1428
Length=1428
Score = 481 bits (260), Expect = 4e-135
Identities = 336/370 (91%), Gaps = 16/370 (4%)
Strand=Plus/Plus
Query 5 TGGGTGAAACGGAATCCGAGGCCGTAAAAGAACTCGGGTTATGCTGGAATGCTTTCCGAT 64
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 566 TGGGTGAAACGGAATCCGAGGCCGTAAAAGAACTCGGGTTATGCTGGAGTGCTTTCCGAA 625
Query 65 CCAGTTGGTTTCAGTTCTCTTACAACATTCCTGGGACAACTGTTTATCGATTCGT----- 119
|||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 626 CCAGTTGGTTTCAGTTTTCTTACAACATTCCTGGAACAACTGTTTATCGACTCGTGAAGG 685
Query 120 -T--AAGGAAGGCTGCGAAGCTGCTAACGGCCTTGATTCTGAAGAAGAAAGCATCAAAAG 176
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 686 CTCGGAGGAAGGCTGCGAAGCTGCTAAAGGCCTTGATTCTGAAGAAGAAAGCATCAAAAG 745
Query 177 AAGGACTTGGCGATTTCTTGGACAGTTGGACATTATATTTGATGAAATGGAAAAGGATGG 236
||||||||||||||||||| | || || ||||||||||||||||||||||||||
Sbjct 746 AAGGACTTGGCGATTTCTT----A----GATATAATATTTGATGAAATGGAAAAGGATGG 797
Query 237 GGCCGCTTTAGACATAGACAGAGCCGTGAACTTGATATTCACCTTCTTCATACTCTCCCA 296
| |||||||||| ||||||| |||||| ||||| |||||| ||||||||||||||||||
Sbjct 798 GACCGCTTTAGATATAGACAAAGCCGTAAACTTAATATTCGTCTTCTTCATACTCTCCCA 857
Query 297 AGAGACAACTCCCGGTGTTCTAGGAGCGGTTGTGAAGCTTGTAGCAGACCACCCCAGCGT 356
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 858 AGAGACAACTCCTGGTGTTCAAGGAGCGGTTGTGAAGCTTGTAGCAGACCACCCCAGCGT 917
Query 357 TATGGAAGAA 366
||||||||||
Sbjct 918 TATGGAAGAA 927
Score = 265 bits (143), Expect = 5e-70
Identities = 174/189 (92%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 366 ACT-ACA-GGTCATCAAAGAGTCGCTTAGGTTTACTAGTACACAACCTACCGTGCATAGA 423
||| ||| ||| ||||||||||| ||| |||||||||||||||||||||| ||||| |||
Sbjct 1015 ACTCACATGGTTATCAAAGAGTCTCTTCGGTTTACTAGTACACAACCTACAGTGCACAGA 1074
Query 424 ATACATGCTCAGGACGTTCAGATTGGAGATTATACATTACCTGCTGGGTGGCTATTTTTT 483
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATACCTGATCAGGACGTTCAGATTGGAGATTATACATTACCTGCTGGGTGGCTATTTTTT 1134
Query 484 GGCATTCCGCAAGTTCATTTTGATGAAGAAAAGTATGGTGACCCACTTACTTTTAATCCA 543
||||| || |||||||| ||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 1135 GGCATCCCTCAAGTTCACTTTGATGAAGAAAAGTATGATGATCCACTTACCTTTAATCCA 1194
Query 544 TGGAGGTGG 552
|||||||||
Sbjct 1195 TGGAGGTGG 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5