BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355315
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15390.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1120 0.0
> AT4G15390.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr4:8792812-8794293 REVERSE LENGTH=1482
Length=1482
Score = 1120 bits (606), Expect = 0.0
Identities = 1034/1235 (84%), Gaps = 51/1235 (4%)
Strand=Plus/Plus
Query 29 TAGCCTCTCTCTTCTACACCAAAAATGATCTCATCTCTCGAGAACACATTTCCCACAAAC 88
|||||| |||||||||||||||||||||| | ||||||| |||||||| |||||||||||
Sbjct 143 TAGCCTTTCTCTTCTACACCAAAAATGATTTGATCTCTCAAGAACACACTTCCCACAAAC 202
Query 89 TCAAGGCTTCTCTGTCCGAAACCTTGACCAAGTTCTACCCTCTTTCCGGTAGAATCAACG 148
||||| |||||||||| |||||| |||||||||||||||||||| |||| ||||||| ||
Sbjct 203 TCAAGACTTCTCTGTCTGAAACCCTGACCAAGTTCTACCCTCTTGCCGGAAGAATCACCG 262
Query 149 GAGTAACCATAGATTGTAACGATGAAGGAGCTATCTTTGTCGATGCTCGTGTCGATAATT 208
|||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 263 GAGTAACCGTCGATTGTACCGATGAAGGAGCTATCTTTGTCGATGCTCGTGTCAATAACT 322
Query 209 GTCCTCTCTCTGGATTTCTCAGGTGCCCTGATTTCGAGGCCCTCCAACAGTTGCTTCCTC 268
|||||||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 323 GTCCTCTCACTGAATTTCTCAAGTGCCCTGATTTCGACGCCCTCCAACAGTTGCTTCCTC 382
Query 269 TAGACGTTGTGGACAACCCATACGTGGCTGCTGCGACATGGCCTTTGCTACTCGTGAAGG 328
|||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 383 TAGATGTTGTAGACAACCCATACGTGGCTGCTGCCACGTGGCCTTTGCTGCTCGTGAAGG 442
Query 329 CAACTTACTTCCAATGTGGAGGCATGGTCATAGGAATCTGCATCTCTCACAAGATTGCCG 388
||||||||||| ||| |||||||||| |||||||||||||||| ||||||| || || |
Sbjct 443 CAACTTACTTCGGATGCGGAGGCATGGCCATAGGAATCTGCATCACTCACAAAATCGCGG 502
Query 389 ACGCAACCTCTATCTCTACTTTCATTCAGACATGGGCTGCTATGGCTCGAGGAGAGGCCG 448
||||| |||| ||||| |||||||||| | | ||||| || | ||||||||||||| ||
Sbjct 503 ACGCAGCCTCCATCTCGACTTTCATTCGGTCCTGGGCCGCCACGGCTCGAGGAGAGAACG 562
Query 449 --GA-GATGA-AGTGGCGGGTCCCG-AGTTTGCTGCAGCAGA-TTTCTACCCACCAGCCA 502
| | || | ||| |||| | | ||||||| || || |||||||||||||||||
Sbjct 563 ATGCCGCTGCGA-TGGAAAGTCCTGTA-TTTGCTGGTGC-GAATTTCTACCCACCAGCCA 619
Query 503 ACGATGCATTTAAGTTTCCGGTGGATGAACAAGCCAATAAGAGGAGCAGCATCACGAAGC 562
| || || |||||| | || | ||| ||||||||| ||||| |||||||| || |||
Sbjct 620 ATGAGGCTTTTAAGCTACCTGCGGACGAACAAGCCGGCAAGAGAAGCAGCATTACAAAGA 679
Query 563 GATTCGTTTTCGATGCTTCTAAGTTGGAACAGCTCAGGACCAAAGCTGCTAGT-ACAGAC 621
|||| || ||||| ||||||||| ||||| | |||||||||||||| |||||| | |||
Sbjct 680 GATTTGTGTTCGAAGCTTCTAAGGTGGAAGATCTCAGGACCAAAGCCGCTAGTGA-AGAA 738
Query 622 GTC-GTAG-CCAGACCTACGCGGGTGGAGAGCGTCACTGCGCTTCTT-TGGAAA-GACTT 677
| |||| ||| ||||||||||||||||||||| |||||||| | | |||||| | |||
Sbjct 739 A-CAGTAGACCA-ACCTACGCGGGTGGAGAGCGTTACTGCGCT-CATCTGGAAATG-CTT 794
Query 678 GGTCGC-TGCTGCATCTTTGTCTTTAACGACAAGTGATCAAAAAGTGCTGCTCCAGCCCG 736
||||| | || || | | ||| || ||||||| ||||||||| |||||| |
Sbjct 795 CGTCGCATCCT-CAAA---GAC---AACTACTTGTGATCACAAAGTGCTGGTCCAGCTTG 847
Query 737 CTAACTTGCGCCCCAAGATACCTTCCCTTCTGCCAGAAAGC-CTGTTCGGCAATGTCATG 795
|||||||||| ||||||||||||||||||||| ||||||| || | ||| ||| |||||
Sbjct 848 CTAACTTGCGGTCCAAGATACCTTCCCTTCTGCAAGAAAGCTCTAT-CGGAAATCTCATG 906
Query 796 TT-TACTTCTGTAGTCTTGAGTATTGGTCCAG-AGGGGGAAGTTAAAATCGAAGAGGCCG 853
|| | ||||||| |||||||||||||||| || ||||| |||||||||| ||||||||||
Sbjct 907 TTCT-CTTCTGTGGTCTTGAGTATTGGTCGAGGAGGGG-AAGTTAAAATTGAAGAGGCCG 964
Query 854 TTGGAGAGTTACGAAAAAAGG-GTGAGGACTTACGATGTTTGATCAAAGACGAGGATGGG 912
|| |||| ||||||||||| | ||||| ||| || | ||||| |||||||| ||||
Sbjct 965 TTAGAGACTTACGAAAAAAAAAG-GAGGAGTTAGGAACTGTGATCCTAGACGAGGGTGGG 1023
Query 913 TC----G--TCATCTTCGATGATTGGTTCTAAACTAGCAAA-CTTGATGTTTGCTAATTA 965
|| | |||||||| ||||| ||||| ||||||||||| || |||| | | || ||
Sbjct 1024 TCATCTGACTCATCTTCCATGATCGGTTCGAAACTAGCAAATCT-GATGCTCACCAACTA 1082
Query 966 TTC-CAAGATGAGCTATGAGACTCATGAGCCCTACACCGTAAGTAGCTGGTGCAAGCTAC 1024
||| | | ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct 1083 TTCTCG-GTTGAGCTATGAGACTCATGAACCCTATACCGTGAGTAGCTGGTGTAAGCTAC 1141
Query 1025 CACTTTACAAGGCTCAT-TTTGGATGGGGAT-CTCCGGTTTGGGTTGCCGGAAATGTTTC 1082
| |||||| ||||| | |||||||||| || ||||||||||||||| || ||||| ||
Sbjct 1142 CTCTTTACGAGGCT-AGCTTTGGATGGG-ATTCTCCGGTTTGGGTTGTTGGGAATGTGTC 1199
Query 1083 TCCCGCGTTGGGAAACTTAGCCATGTTGATCGATTCCAAGGACGGACAAGGAATTGAAGC 1142
|||| ||| || ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 CCCCGTGTTAGGCAACTTGGCCATGTTGATAGATTCCAAGGACGGACAAGGAATTGAAGC 1259
Query 1143 GTTTGTTACACTGTCTCAGGAGAACATGTCGTCTTTCGAGCAGAACCCAGAACTACTCGC 1202
||| || |||||| || | |||||||||||||| ||||||||||||||||| | |||||
Sbjct 1260 GTTCGTCACACTGCCTGAAGAGAACATGTCGTCCTTCGAGCAGAACCCAGAGTTGCTCGC 1319
Query 1203 CTTTGCCT-CCTTGAATCCTAGTGTCTTGGTTTAA 1236
|||||| | || |||| ||||||||||||||||||
Sbjct 1320 CTTTGC-TACCATGAACCCTAGTGTCTTGGTTTAA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5