BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355323
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14730.1 | Symbols: | Bax inhibitor-1 family protein | chr4... 691 0.0
> AT4G14730.1 | Symbols: | Bax inhibitor-1 family protein | chr4:8448549-8450073
FORWARD LENGTH=838
Length=838
Score = 691 bits (374), Expect = 0.0
Identities = 437/468 (93%), Gaps = 2/468 (0%)
Strand=Plus/Plus
Query 275 TGTTGTGGCCTCTGTTGGCTTTTGAGAAGAAGCATCCCATAAACTGCATTGTCCTGTCCA 334
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 297 TGTTGTGGCCTCTGTTGGCTTTTGAGAAGAAGCATCCGATAAACTGCATTGTCCTGTCCA 356
Query 335 TCTTCACGCTCTCCATTTCCTTCGCTGTTGGGATTTGCTGCTCTCTCTCCAAAGGGAGGA 394
||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 357 TCTTCACTCTCTCCATTTCCTTCTCTGTGGGGATTTGCTGCTCTCTCTCCCAAGGGAGGA 416
Query 395 TTGTTCTGGAGGCTGCAATTCTCACATCTGTGATGGTCTTTGGGT-TGACAATCTACACC 453
|||||||||||||||||||||||||| |||||||||||||| ||| | || |||||||||
Sbjct 417 TTGTTCTGGAGGCTGCAATTCTCACAGCTGTGATGGTCTTT-GGTCTAACGATCTACACC 475
Query 454 TTCTGGGCAGTGAAGAGAGGACATGATTTCTCCTTCCTTGGACCATTCCTCTTTGGTGCA 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTCTGGGCAGTGAAGAGAGGACATGATTTCTCCTTCCTTGGACCATTCCTCTTTGGTGCT 535
Query 514 CTCCTCATTATCCTCGCCTTCACTCTTTTGCAGATATTTCACCCTCTCGGGAAGCTATCT 573
|||||||||||||| | |||||| |||||||||||||| |||||||| |||||||||||
Sbjct 536 CTCCTCATTATCCTTGTCTTCACCCTTTTGCAGATATTCCACCCTCTGGGGAAGCTATCA 595
Query 574 TCGATGATATTCAGCGGAATAGCTTCGATCGTGTTCTGCGGATACATCATCTTTGACACA 633
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 596 TCGATGATATTCAGCGGAATAGCTTCAATAGTGTTCTGCGGATACATCATCTTCGACACC 655
Query 634 AACCAGCTTATCAAGAAACTCAACTACGACGAGTATATCCCTGCCGCGATTCGTCTATAC 693
|| ||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 656 AATCAGCTGATCAAGAAACTCAACTACGACGAATATATCACTGCAGCGATTCGTCTATAC 715
Query 694 CTCGATGTTATGAATCTCTTCCTCAACCTCCTCGGCATCATGAGCAAC 741
||||| ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 716 CTCGACGTTATGAATCTCTTCCTCAGTCTCCTCGGCATTATAAGCAAC 763
Score = 346 bits (187), Expect = 2e-94
Identities = 225/243 (93%), Gaps = 3/243 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAATCTGACATTGAAACTGGTGGTGGTAACGAGCTTTATCCGGGAATGAAAGAG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 ATGGCGAAATCTGACATTGAAACTGGTGGTGGTAACGAGCTGTATCCGGGAATGAAAGAG 118
Query 61 AGCTCTGAGCTTCGTTGGGCTTTCATAAGGAAAGTTTACAGCATTCTGTCTCTTCAGATG 120
||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||
Sbjct 119 AGCTCGGAGCTTCGTTGGGCTTTCATAAGAAAACTTTACAGCATTTTGTCTCTTCAGTTG 178
Query 121 CTCCTCACCGTCGGAGTCTCCGCTC-TTGTTTACTTCGTCCGTCCGATTCCTGAGTTCAT 179
|| ||||||||||||||||||| | |||||||||||||||||||||| || ||||||||
Sbjct 179 CTTGTCACCGTCGGAGTCTCCGC-CGTTGTTTACTTCGTCCGTCCGATCCCCGAGTTCAT 237
Query 180 CACTGAGACTCACCGTGGCCTCGCCGTCTTTTTCGTCATCCTCATTCTTCCTTTCCTCC- 238
||| ||||||||||||||||| ||||||||||||||||||||| | |||||| ||||||
Sbjct 238 CACCGAGACTCACCGTGGCCTTGCCGTCTTTTTCGTCATCCTCCTCCTTCCTCTCCTCCT 297
Query 239 GTT 241
|||
Sbjct 298 GTT 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5