BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355343
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14590.1 | Symbols: emb2739 | embryo defective 2739 | chr4:8... 1642 0.0
AT4G14600.1 | Symbols: | Target SNARE coiled-coil domain prote... 695 0.0
AT1G29060.1 | Symbols: | Target SNARE coiled-coil domain prote... 571 8e-162
> AT4G14590.1 | Symbols: emb2739 | embryo defective 2739 | chr4:8374391-8375962
FORWARD LENGTH=1527
Length=1527
Score = 1642 bits (889), Expect = 0.0
Identities = 1019/1082 (94%), Gaps = 7/1082 (1%)
Strand=Plus/Plus
Query 451 GAATTGG--TGAGTTTGTTTCTTGAGAAATGGGATTGTTTGCTGGAAGA-TATGCCCTTG 507
||||||| | ||||||||||||||||||||||| || ||||| || || | | || |||
Sbjct 404 GAATTGGAATTAGTTTGTTTCTTGAGAAATGGGAATGCTTGCTTGATGATTCT-CCATTG 462
Query 508 GTGTTGACTAGTGCTCTGTATAGTTTTCTTCGGTTATTAGCGGATCATTATAGGGTTTTA 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GTGTTGACTAGTGCTCTGTATAGTTTTCTTCGGTTATTAGCGGATCATTATAGGGTTTTA 522
Query 568 GGTGTTGCGAAACTGGAGAATGTGAAGAGATTGGAGATCAAATTCTGTGTTAAAATGTTT 627
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GGCGTTGTGAAACTGGAGAATGTGAAGAGATTGGAGATCAAATTCTGTGTTAAAATGTTT 582
Query 628 AGAGAGCAGCTTCATTTAAGTATGAAGATCGGACGGGACGTTATCCTGTTGTTGCAGGAT 687
||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 583 AGAGAGCAGCTTCATTTAAGTTTGAAGATTGGACGGGACCTTATCCTGTTGTTGCAGGAT 642
Query 688 CTGTCTCATGTCTCTGAGTTCAGAGAGATATGGAACGATTTGGTGTCGAACCATTGCTCT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CTGTCTCATGTCTCTGAGTTCAGAGAGATATGGAACGATTTGGTGTCGAACCATTGCTCT 702
Query 748 GATATTTACCAGTTGAAGACTTCAAGTAGATACTTCCTTCTTCGAATAACTCCTGAGATG 807
|| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 703 GAGATATACCAGTTGAAGACTTCTAGTAGATACTTCCTTCTTCGAATCACTCCTGAGATG 762
Query 808 GAAACACAATTAAGGTTTTTGCTTGGAAATGTGAAATTGGGAAGTCATAAGCGGCATCAG 867
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 763 GAAACACAATTAAGGTTTTTGCTAGGAAATGTTAAATTGGGAAGTCATAAGCGGCATCAG 822
Query 868 ATGTGGTTCTTGAAGAAGTTTCTCTTGGGTCCTGAGAAAGAAACGCTTTTGATCGACATA 927
|| |||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||
Sbjct 823 ATATGGTTCTTGAAGAAGTTTCTTTTGGGTCCGGAGAAAGAAACACTTTTGATAGATATA 882
Query 928 GTGAGATTCGTTTGCTGCGTTATTCATCCAACTAACGAAATCATCAGATCAGAGATCATG 987
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GTGAGATTCGTTTGCTGTGTTATTCATCCAACTAACGAAATCATCAGATCAGAGATCATG 942
Query 988 CCAAGATGGGCTATTATAGGTTGGCTTTTGGAACTGTGTAGGCAAAATCATCACATCGAA 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CCAAGATGGGCTATTATAGGTTGGCTTTTGGAACTGTGTAGGCAAAATCATCACATCGAG 1002
Query 1048 CGAAGTGTTAAGCTGGCTCTGTTTTACGATTGGCTCTTCTTTGACGAAAGATTCGATAAT 1107
||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1003 CGAAGCGTTATGCTGGCTCTGTTTTACGACTGGCTCTTCTTTGACGAAAGAATCGATAAT 1062
Query 1108 ATTATGAATGTTGAACCTGCTGCTCTCTTGATGGTATGGTCGATACCACAGTATCCACAC 1167
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1063 ATTATGAATGTTGAACCTGCTGCTCTCTTGATGGTATGGTCAATACCGCAGTATCCACAC 1122
Query 1168 ATCACTCACTCCTTACTTGAATTCGTACTTCATCTTGTGGAAACTTATGACATAAGCAGT 1227
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||
Sbjct 1123 ATCACTCACTCCTTACTTGAATTCTTACTTCATCTTGTCGAAACTTATGACATAACCCGT 1182
Query 1228 CGAGATATTATTGTAAGAGGTTTGACGTCAGCATTCAGAGAAATTGAGCGAAAAGGAGTT 1287
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 CGCGATACGATTGTAAGAGGTTTGACGTCAGCATTCAGAGAAATTGAGCGAAAAGGAGTT 1242
Query 1288 ATTCGGTCGCTAGATATATTCCTAACAAATCCTGCGCTTGCAGCAGATTTGAAGAAGAAG 1347
||||||||||| |||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 1243 ATTCGGTCGCTGGATATATTCCTAGCAAATCCTGCACTTGCACCAGATTTGAAGAAGAAG 1302
Query 1348 CTAGCAAATCTGTTGACATGTCATCAGGTGAAG--G-TTCCTGTGAATCTCCATCAACTT 1404
||||||||||||||| |||||||||||| |||| | ||| |||||||||| ||||| ||
Sbjct 1303 CTAGCAAATCTGTTGTCATGTCATCAGGAGAAGACGGTTCATGTGAATCTCAATCAAGTT 1362
Query 1405 AGTGTTCCTTCTAAGCAAACATTTCTTTCTTCAGAAGCTAATTTAAAAGAATGCAGCACC 1464
||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 1363 AGTGTTCTTTCTAAGCAAACAGTTCTTTCTTCGGAAGCTAATTTAAAAGATTGCAGCACC 1422
Query 1465 AAAATTGTTGATATTCCTGATCAGAAGTTGGACAACTCCGTTGAAAATCCAGCAAAACAC 1524
||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||
Sbjct 1423 AAAATTGTTGATACTCCTGACCAGAAGTTGGACAATTCCGTTGAAAATCCAGCAAAAAAC 1482
Query 1525 CA 1526
||
Sbjct 1483 CA 1484
Score = 669 bits (362), Expect = 0.0
Identities = 394/410 (96%), Gaps = 0/410 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAACCACTTTGTTACATCGAAACTGATTCGTGACTCTCTACACGAAGTTGAGAAC 60
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1 ATGGAGAACCACTTTGTTACATCGAAACTGATCCGTGTCTCTCTACACGAAGTTGAGAAC 60
Query 61 CAGCTCGAACTGTCAATACGTCAAGCCTTTGAGTCTCTCCAGCCGAAACTACGACCACCG 120
||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 CAGCTCGAACTATCACTACGTCAAGCCTTCGAGAATCTCCAGCCGAAACTACGACCACCG 120
Query 121 TTTTCCTTAGAAATCCCAGAGCCACAAGAGTATCTTGAGCTCAATAAAGCCATCGTCTAT 180
|| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTCCTTAGAACTCCCAGACCCACAAGAGTATCTTGAGCTCAATAAAGCCATCGTCTAT 180
Query 181 GGAGTTTTATGCGAACCCAATTACTCTAAAACCCATATCAAGCACTTACATGCTCTCGTC 240
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGAGTTTTATGCGAACCAAATTCCTCTAAAACCCACATCAAGCACTTACATGCTCTCGTC 240
Query 241 ACTGATGGGTATGCGTTTTTCACTAGTTTACTTATTGGAATCGTTGTTGAATTGCATGTT 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 ACTGATGGGTACGCGTTTTTCACTAGTTTACTTATTGGAATCGTTGTTGAATTGTATGTT 300
Query 301 AAGCTTGTTGATTCCGCTAAGATTCAGCTTATTTGGGTAACTAAGGAGATGATTGATGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGCTTGTTGATTCCGCTAAGATTCAGCTTATTTGGGTAACTAAGGAGATGATTGATGTT 360
Query 361 TCAAGTGTGGGGATTGAGGATTTGCTTGTGTCGTTGTTGCGACGAATTGG 410
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TCAAGTGTGGGGATTGAGGATTTGGTTGTGTCGTTGTTGCGACGAATTGG 410
> AT4G14600.1 | Symbols: | Target SNARE coiled-coil domain protein
| chr4:8376400-8378335 FORWARD LENGTH=833
Length=833
Score = 695 bits (376), Expect = 0.0
Identities = 417/437 (95%), Gaps = 1/437 (0%)
Strand=Plus/Plus
Query 1744 CAGA-TCCGATTAGATTTCGCGTCGATGGCGTCAAATCCTCACAGAGGCGGTGCGGGTGG 1802
|||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||||||
Sbjct 138 CAGATTCCGATTAGATTTTGCGTCGATGGCGTCAAATCCACACAGAAGCGGTGCGGGTGG 197
Query 1803 TTCCCTTTACGGTGGAGCCGCTCCGTACAGATCCAGAGAAGGGCTTAGCACTAGAAATGC 1862
||||||||| || ||||||||||| |||||||| || ||||||||||| |||||||||||
Sbjct 198 TTCCCTTTATGGCGGAGCCGCTCCATACAGATCTAGGGAAGGGCTTAGTACTAGAAATGC 257
Query 1863 TGCAGGTTCAGAAGAAATCCAGCTGAGGATTGATCCGATGCACTCTGACCTGGATGATGA 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TGCAGGTTCAGAAGAAATCCAGCTGAGGATTGATCCGATGCACTCTGACCTGGATGATGA 317
Query 1923 GATCACAGGTCTCCATGGCCAAGTCAGGCAGTTGAAAAATATTGCTCAAGAAATTGGGTC 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GATCACAGGTCTCCATGGCCAAGTCAGGCAGTTGAAAAATATTGCTCAAGAAATTGGGTC 377
Query 1983 AGAAGCTAAGTTTCAGAGGGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCACA 2042
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 AGAAGCAAAGTTTCAGAGAGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCGCA 437
Query 2043 AGCCGGGGTGAAGAACAACATAAGGAAACTAAACATGAGCATAATCCGTAGTGGCAACAA 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGCCGGGGTGAAGAACAACATAAGGAAACTAAACATGAGCATAATCCGTAGTGGCAACAA 497
Query 2103 CCACATAATGCACGTGGTTCTTTTTGCGCTCCTCGTCTTCTTTATTCTCTACATGTGGTC 2162
|||||| ||||||||||||||||| || ||||||||||||||| | |||||||| |||||
Sbjct 498 CCACATCATGCACGTGGTTCTTTTCGCTCTCCTCGTCTTCTTTGTCCTCTACATCTGGTC 557
Query 2163 CAAGATGTTCAAAAGAT 2179
||||||||||||||||
Sbjct 558 TAAGATGTTCAAAAGAT 574
> AT1G29060.1 | Symbols: | Target SNARE coiled-coil domain protein
| chr1:10147693-10149686 FORWARD LENGTH=796
Length=796
Score = 571 bits (309), Expect = 8e-162
Identities = 391/429 (91%), Gaps = 11/429 (3%)
Strand=Plus/Plus
Query 1752 ATTAGATTTCGCGTCGATGGCGTCAAATCCTCACAGAGGCGGTGCGGGTGGTTCCCTTTA 1811
|||||||||||||||||||||||| || | | |||||||||||||||| || ||
Sbjct 149 ATTAGATTTCGCGTCGATGGCGTCCAA---T--C----GCGGTGCGGGTGGTTCTCTATA 199
Query 1812 CGGTGGAGCCGCTCCGTACAGATCCAGAGAAGGGCTTAGCACTAGAAATGCTGCAGGTTC 1871
||| ||||| | |||||| ||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 200 CGGCGGAGCTGATCCGTATAGATCTAGAGAAGGGCTAAGCACTAGAAATGCTTCAGGTTC 259
Query 1872 AGAAGAAATCCAGCTGAGGATTGATCCGATGCACTCTGACCTGGATGATGAGA-TCACAG 1930
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 260 AGAGGAAATTCAGCTGAGGATTGATCCTATGCACTCTGACCTGGATGATGAGATTC-TAG 318
Query 1931 GTCTCCATGGCCAAGTCAGGCAGTTGAAAAATATTGCTCAAGAAATTGGGTCAGAAGCTA 1990
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 319 GTCTCCATGGCCAAGTCAGGCAATTGAAAAATATTGCTCAAGAAATTGGGTCAGAAGCAA 378
Query 1991 AGTTTCAGAGGGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCACAAGCCGGGG 2050
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 379 AGTCTCAGAGGGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCGCAAGCAGGGG 438
Query 2051 TGAAGAACAACATAAGGAAACTAAACATGAGCATAATCCGTAGTGGCAACAACCACATAA 2110
|||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||
Sbjct 439 TGAAGAACAACATAAGGAAACTGAACCTAAGCATAATCCGTAGTGGTAACAACCACATAA 498
Query 2111 TGCACGTGGTTCTTTTTGCGCTCCTCGTCTTCTTTATTCTCTACATGTGGTCCAAGATGT 2170
||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 499 TGCACGTAGTTCTTTTCGCGCTCCTCCTCTTCTTTATCCTCTACATGTGGTCCAAGATGT 558
Query 2171 TCAAAAGAT 2179
|||||||||
Sbjct 559 TCAAAAGAT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108182174475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5