BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355384
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14280.1 | Symbols: | ARM repeat superfamily protein | chr4... 3563 0.0
> AT4G14280.1 | Symbols: | ARM repeat superfamily protein | chr4:8222518-8225185
FORWARD LENGTH=2508
Length=2508
Score = 3563 bits (1929), Expect = 0.0
Identities = 2244/2398 (94%), Gaps = 13/2398 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGACCGTACTACCGATGTCGTCGTAGAAGTCGGTTCTTCTGGCAGAACTATTTTC 60
|||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGTTGACCGTCCTACCGATGTGGTCGTAGAAGTCGGTTCTTCCGGCAGAACTATTTTC 60
Query 61 CGACCGGACGAGACTCCGACTCCAGAACCTCGGAGACCAACACAATT---GCCAGTTCCT 117
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CGACCGGACGAGACTCCGACTCCAGAACCTCGGAGACCAACACAATTGCCGCCAGTTCCT 120
Query 118 GCGCCGGAGAAAAAACTGACACTTTTTGCCTTAAGACTCGCTGTTCTTGAGAAGATTGCT 177
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCACCGGAGAAAAAACTGACCCTTTTTGCCTTAAGACTCGCTGTTCTTGAGAAGATTGCT 180
Query 178 TCACGCTTGGGATCTTTAGGTTTCGTGTGGGCCACGGTTGTTCTTCTTGGTGGATTCGCT 237
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAGGGTTGGGATCTTTAGGTTTCGTGTGGGCCACGGTTGTTCTTCTTGGTGGATTCGCT 240
Query 238 GGAAGTTTAGAGATAACAGATTTCTGGTTTGTTACTGTGATTCTTGTTATCGAAGGAGCT 297
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGAAGTTTAGAGATAACAGATTTCTGGTTTGTTACTGTGATTCTTGTTATTGAAGGAGCT 300
Query 298 CGGCTTTTCAGTAGAAGCCATGAGCTTGAACTGCAGCATCAGTCTAAATACACAATCTCT 357
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGGCTTTTCAGTAGAAGCCACGAGCTTGAACTGCAGCATCAGTCTAAGTACACAATCTCT 360
Query 358 GGAATCAACATCTTCCGGTTCCTTGTAAAACACGTTATCCAAATATTCCACCAGGCGGCT 417
|||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||| ||||
Sbjct 361 GGAATCAACATCTTCCGGTTCCTTGTCAAACAAATTAACCAAATATTTCACCAGGTGGCT 420
Query 418 CACATTGCCGG-GAACGACAACAGACCACCGGTTCGAGAAAGGAAGATT-GTACAGAGAA 475
||||||||||| || |||||| |||||| |||||||||||| || || ||||| || |
Sbjct 421 CACATTGCCGGAGA-CGACAATAGACCATCGGTTCGAGAAACGA-GAACCGTACAAAGGA 478
Query 476 ATTCGGGGCAGATCACGAGGACAAGAACATGGAAAAGTTCAGATGTTCCTATGTTACCTT 535
||||||| || |||||| ||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 479 ATTCGGGACACATCACGCGGACAAGGACATGGAAAAGCTCAGATGTTCCTATGTTGCCTT 538
Query 536 ACACTGGATGGGTCTTTGTTTCAAGAAACGTGAGTAGAGTCTTCTATTGGCTTCAGATTG 595
|||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 539 ACACAGGATGGGTTTTTGTTTCAAGAAACGTGAGTAGAATCTTCTATTGGCTCCAGATTG 598
Query 596 CTTCTGCTTTCGCCAGCATTGCTATCTCCACGATCCAACTCATCAAGCAAGACTATGGAG 655
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 599 CTTCTGCTTTCGCCAGCATTTTTATCTCCACGATCCAACTCATCAAACAAGACTATGGAG 658
Query 656 GCAACGACTCGAAACCCAAACGCACCAATCTTCACGCAGCTTTGACTCTCTTCTACTCTC 715
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCAACGACTTGAAACCCAAAAGCACCAATCTTCACGCAGCTTTGACTCTCTTCTACTCTC 718
Query 716 TAGCCCTAGCCGAGGCTCTTCTGTTTCTTGTTGAGAAAGCTTACTGGGAATATATGATTA 775
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 TAGCCCTAGCCGAGGCTCTTCTGTTCCTTGTTGAGAAAGCTTACTGGGAATATATGATTA 778
Query 776 GTGTTATCAAGATTCTTGAGAAAGTAAATGAAGAATGCGGTCTTGAGAGATTTGGCACGG 835
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 779 GTGTTATCCACATTCTTGAGAAAGTGAATGAAGAATGCGGTCTTGAGAGATTTGGTACGG 838
Query 836 GCTCGGTGAGAAGATTTTTCTATGATGCCTATTCAAGATGCCTCAATGGGAGCATCTTCG 895
| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 839 GATCGGTGAGAAGATTCTTCTATGATGCCTACTCAAGATGCCTCAACGGGAGCATCTTCG 898
Query 896 ACGGATTGAAGATGGATATGGTGATTTTTGCCATGGAGCTCTTGGTAACGAATTCTCTTG 955
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 899 ACGGATTGAAGATGGATATGGTGATCTTTGCCATGGAGCTCTTGGTAGCGAATTCTCTTG 958
Query 956 ATGAGCAGCTCATTGGAGCAGAGATTCTCTCGATATTCTCAACCCACGACGACTATTCGG 1015
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 ATGAGCAGCTCATTGGAGCAGAGATTCTTTCGATATTCTCAACCCACGACGACTATTCGG 1018
Query 1016 TTGATACTTTGCAGAAGATTGGGACAAATCTGGCAATCATAGAAAGGTTAGTGGAGATGT 1075
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1019 TTGATACTTTGCAGAAGATTGGGACAAATCTTGCAATCATAGAAAGGTTAGTGGAGATGT 1078
Query 1076 TGAATTGGAGAAACAAGAATCAAGAAGATGTGAGAATGTCAGCTGCAGAGATTCTCTCAA 1135
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGAATTGGAGAGACAAAAATCAAGAAGATGTGAGAATGTCAGCTGCAGAGATTCTCTCAA 1138
Query 1136 GATTAGCTAGTAAGAAGCAGAATTCTCTGAGAGTTGCGGGGATCCCGGGGGCGATTGAGT 1195
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1139 GATTAGCTAGTAAGAAGCAGAACTCTCTGAGAGTTGCGGGGATCCCGGGAGCGATTGAGT 1198
Query 1196 CGATATCTTCTCTTTTAGAGAACACTAGAGATTCGGGTGAAGCCACGGATGAGATTGGAG 1255
||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||
Sbjct 1199 CGATATCTTCTCTTTTAGAGAGCACGAGAGATTCAGGTGAAGCCACTGATGAGATTGGAG 1258
Query 1256 AAAATAGTATTAATCAATT-AAATTTATGGACGTTGAACAATCTTGGACTGTTGATTCTG 1314
|| | ||||| || || || |||||||||||| |||||||||||||||||| ||||||||
Sbjct 1259 AACAGAGTATAAACCA-TTCAAATTTATGGACATTGAACAATCTTGGACTGCTGATTCTG 1317
Query 1315 AAAAGGCTAGCTCGAGATCATGATAACTGTGGGAAGATTGGTAAAACAAAAGGGTTACTT 1374
||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct 1318 AAAAGGCTAGCTCGAGATCATGAGAACTGTGGAAAAATTGGGAAAACAAAAGGGTTACTT 1377
Query 1375 TCAAAGATCATTGACTTCACTTATGCTGAGAAGAGGTTGTTAGAAAAGTCGAA-TGTTGC 1433
|||||||||||||||||||||||||||||||||| ||||| ||||| || || ||||||
Sbjct 1378 TCAAAGATCATTGACTTCACTTATGCTGAGAAGAATTTGTTGGAAAA-TCCAAATGTTGC 1436
Query 1434 GGTTGCAGAGCCTTATAAGGTCTTGGCTGTGAAACGGTCTTTGAAGCTGTTAAAGAAGCT 1493
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TGTTGCAGAGCCTTATAAGATCTTGGCTGTGAAACGGTCTTTGAAGCTGTTAAAGAAGCT 1496
Query 1494 GGTTAGCACGACCGGTGCAACGGGGAAGAACTTAAGGATGATTGTCTCTGGGATTGTCTT 1553
||| |||||||| || |||| ||||||||||| ||||||| | ||||||||||||||||
Sbjct 1497 GGTGAGCACGACAGGCACAACAGGGAAGAACTTGAGGATGACTATCTCTGGGATTGTCTT 1556
Query 1554 CACAGTGAGCAACATTAGGGAAACATTACACCACGGGAAGAGTCAACCTGATTTGCAAAA 1613
|||||||||||||||||||||||||||||| || || |||||||| ||| ||||||| ||
Sbjct 1557 CACAGTGAGCAACATTAGGGAAACATTACATCATGGAAAGAGTCAGCCTCATTTGCAGAA 1616
Query 1614 GCTTGGTGCAGAGATCTTGACTTTCCTTGCGTTTGAAGAAGGTGCAACCGAGAAAATTGG 1673
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1617 GCTTGGTGCAGAGATTTTGACTTTCCTTGCGTTTGAAGAAGGTGCAACCGAGAAAATCGG 1676
Query 1674 GGGCACGGGCGGGGTTTTGAAAGGACTTCTCTGCATATTTTTGAACAATGAGATTCCAAA 1733
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1677 AGGCACGGGCGGGGTTTTGAAAGGGCTTCTCTGCATATTCTTGAACAATGAGATTCCAAA 1736
Query 1734 GGATAAAAGTGGTGTGAGAGTCTCTGCTGGTGAATCTATAGCTATGCTAGCTCAAGGAAG 1793
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1737 GGACAAAAGTGGTGTGAGAGTCTCTGCTGGTGAATCTGTTGCTATGCTAGCTCAAGGAAG 1796
Query 1794 TAAAAGCAATTGCCAACGGATCTTGAGATCAAATGTTCTTAAGGGACTCGTTGAGGCTTT 1853
|||||||||||||||| ||| |||||| ||||||||||||||||||||||||| || ||
Sbjct 1797 TAAAAGCAATTGCCAAAAGATATTGAGAGCAAATGTTCTTAAGGGACTCGTTGAAGCGTT 1856
Query 1854 AGACAACCCGTTGATTCGGTTGAATTCAGCAAGAATCTTGCGGAATCTCTGCGCATATAC 1913
|||||||||||||||||||||||| |||| || |||||||| |||||||| ||||||||
Sbjct 1857 GGACAACCCGTTGATTCGGTTGAATGCAGCGAGGATCTTGCGTAATCTCTGTGCATATAC 1916
Query 1914 AGCTCCTGGTCAGTTCAATGAAGAGATGAAGAAAATTATTAAATCTGCAGGAGCAACAGT 1973
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1917 AGCTCCTGGTCAGTTCAATGAACAGATGAAGGAAGTTATTAAATCTGCAGGAGCAACAGT 1976
Query 1974 TCTTATGGCAATCAAGTCTGAAGACCGAAAACCTCAAGAAGTTATGGTGGGATTAGCACC 2033
||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1977 TCTTAAGGCAATAAAGTCTGAAGAGAGGAAACCTCAAGAAGTTATGGTGGGATTAGCACC 2036
Query 2034 ACATATTCTCAAGTTAATGAGTACTCCTGAAGAACTGAGAGGGATATTCGAGGAAGCGGG 2093
|||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||| ||
Sbjct 2037 ACATATTCTCAAGTTAATGAATACTCCCGAAGAATTGAGAGGGATGTTCGAGGAAGCCGG 2096
Query 2094 AGTAAGCGAGGAAGAACTAGCCAATGCATTAATCAATATTCTCAAGAAATATGAACAGCC 2153
||||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 2097 AGTAACCGAGGAAGAACTAGCCAAGGCATTAATCAATATCCTCAAGAGATATGAACAGCC 2156
Query 2154 AGTTCCAAAGGTTCCAAGAATTAGGAGGTTCGCAATAGAGCTAACCATTGCGATGATGAA 2213
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2157 AGTTCCAAAGGTTCCAAGAATCAGGAGGTTTGCAATAGAGCTAACCATTGCGATGATGAA 2216
Query 2214 AGCTAATCCT-GAGACGGTCAAGACTTTCCAAAACCTTGAAATGAAGAATGAATTAGAGA 2272
|||||| | | ||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2217 AGCTAA-CGTTGAGACTGTCAAGACCTTCCAAAACCTTGAGATGAAGAATGAATTAGAGA 2275
Query 2273 CTATCTTCGAGACCGCGGCTGAGCTTGAGAACTTTGATATATTCTCTGGCACAGTTGGTT 2332
| |||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 2276 CCGTCTTTGAGACCGCGGCTGAGCTTGAGAACTTTGATATATTTTCTGGCACGGTCGGTT 2335
Query 2333 TGGCACGCCATGGCTCAACGATCAATGAACTCATTGAAGAAGCAATGCTGTTGTTGAG 2390
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2336 TGGCACGCCATGGTTCAACTATCAATGAACTCATTGAAGAAGCAATGCTGTTGTTGAG 2393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118874890560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5