BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355402

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14145.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   649    0.0   
  AT4G08991.1 | Symbols:  | Pseudogene of AT4G14145 | chr4:577077...   510    3e-144


> AT4G14145.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 
proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other 
Eukaryotes - 2996 (source: NCBI BLink). | chr4:8152290-8153678 
REVERSE LENGTH=798
Length=798

 Score =  649 bits (351),  Expect = 0.0
 Identities = 387/405 (96%), Gaps = 0/405 (0%)
 Strand=Plus/Plus

Query  1    ATGACAACAATCGAAACCGGTCAGAAAACTCAAAAGTCTCCTCCTTCTGGTTCTGCTGCT  60
            ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||
Sbjct  185  ATGACAACAATCGAAACCGGTCAGAAAACTCAAAAGTCTTCTCCTTCCGGTTCTGGTACT  244

Query  61   GCGGCTACTGGTACTCTCAAGCAGTCATCGGCATCGTTTAAAAGGTGGGGAAGGAGACAC  120
             |  ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  245  ACCCCTACTGGTACTCTTAAGCAGTCATCAGCATCGTTTAAAAGGTGGGGAAGGAGACAC  304

Query  121  CCATTTGTACGATATGGACTTCCGATGATATCTCTCACTGTATTTGGAGCCCTCGGACTC  180
            || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  CCGTTTGTAAGATATGGACTTCCGATGATATCTCTCACTGTATTTGGAGCCCTCGGACTC  364

Query  181  GGCCAACTCCTTCAAGGCAGTAAGGATATTGCAAAGGTAAAAGATGACCAGGAATGGGAG  240
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  365  GGCCAACTCCTTCAAGGCAGTAAGGATATTGCAAAGGTAAAAGATGACCAAGAATGGGAG  424

Query  241  ATTATAGAGACAAGAAAGGCGCTTTCGAGAACAGGACCTGTCGATGCTTATAAACCTAAA  300
            |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  425  ATTATAGAAACAAGAAAGGCACTTTCGAGAACAGGACCTGTCGATGCCTATAAACCTAAA  484

Query  301  AACACATCCATCGAAGATGAGCTTAAGGCTATGCAACAGAAGGTGGACATAAACACGTAC  360
            ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  485  AACACATCCATTGAAGATGAGCTCAAGGCTATGCAAGAGAAGGTGGACATAAACACGTAC  544

Query  361  GAGTACAAGAAAATTCCAAAGCTAAACGAAAGCAAGTCGAGTTAA  405
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  545  GAGTACAAGAAAATTCCAAAGCTAAACGAAAGCAAGTCGAGTTAA  589


> AT4G08991.1 | Symbols:  | Pseudogene of AT4G14145 | chr4:5770770-5771335 
REVERSE LENGTH=384
Length=384

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 354/389 (91%), Gaps = 15/389 (4%)
 Strand=Plus/Plus

Query  25   AAAACTCAAAAGTCTCCTCCTTCTGGTTCTGCTGCTGCGGCTACTGGTACTCTCAAGCAG  84
            ||||||||||||||| |||||||  |||||||| || |  |  |  ||||||| ||||||
Sbjct  1    AAAACTCAAAAGTCTTCTCCTTCCAGTTCTGCTACTAC--C-GC--GTACTCTTAAGCAG  55

Query  85   TCATCGGCATCGTTTAAAAGGTGGGGAAGGAGACACCCATTTGTACGATATGGACTTCCG  144
            || |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct  56   TCTTCGGCATCGTTTAAAAGGTGGGGAAGGAGACATCCGTTTGTACAATATGGACTTCCG  115

Query  145  ATGATATCTCTCACTGTATTTGGAGCCCTCGGACTCGGCCAACTCCTTCAAGGCAGTAAG  204
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  116  ATGATATCTCTCACAGTATTTGGAGCCCTCGGACTTGGCCAACTCCTTCAAGGCAGTAAG  175

Query  205  GATATTGCAAAGGTAAAAGATGACCAGGAATGGGAGATTATAGAGACAAGAAAGGCGCTT  264
            |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct  176  GATATTGCAAAGGTAAAAGATGACTAAGAATGGGAGATTATAGAAACAAGAAAGGCGCTT  235

Query  265  TCGAGAACAGGACCTGTCGATGCTTATAAACCTAAAAACACATCCATCGAAGATGAGCT-  323
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  236  TCAAGAACAGGACCTGTTGATGCTTATAAACCTAAAAACACATCCATCGAAGATGAGCTC  295

Query  324  ----TAA----GGCTATGCAACAGAAGGTGGACATAAACACGTACGAGTACAAGAAAATT  375
                |||    |||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  296  AAGGTAACAAAGGCTATGCAAGAGAAGGTGGA-ATAAACACGTACGAGTACAAGAAAATT  354

Query  376  CCAAAGCTAAACGAAAGCAAGTCGAGTTA  404
            || ||||||||||||||||||||||||||
Sbjct  355  CCCAAGCTAAACGAAAGCAAGTCGAGTTA  383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5