BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355403

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27884.1 | Symbols:  | other RNA | chr3:10346155-10348282 RE...   171    5e-42


> AT3G27884.1 | Symbols:  | other RNA | chr3:10346155-10348282 
REVERSE LENGTH=738
Length=738

 Score =  171 bits (92),  Expect = 5e-42
 Identities = 163/196 (83%), Gaps = 9/196 (5%)
 Strand=Plus/Plus

Query  1    ATGGCGATCTCTTACGGCCATCTTCTTCTTCTCCTCATCCTATCTTTCTTCTGGTTGCCT  60
            |||||||||||| |||  |||||| |||||||||||||||||||  ||||||  || |||
Sbjct  114  ATGGCGATCTCTCACGTTCATCTTTTTCTTCTCCTCATCCTATCACTCTTCTTATTACCT  173

Query  61   AATTTGCTGGCCATCCCTTTCA-GC-GACTGTGGTGATGGAAGTTCTCCTGTTGAAGTCA  118
            | ||||| |||||| |  || |  | ||||| ||||||| ||||||||||||||||||||
Sbjct  174  ACTTTGCGGGCCAT-CGATT-ATTCTGACTGCGGTGATGTAAGTTCTCCTGTTGAAGTCA  231

Query  119  CTAGTGTGGAT-A--TACGTGAAG-ATAAGGGCATGGCAAGCTTTCAGATATCCGGTTCT  174
            ||||||||||  |  ||| | ||| |||||| || |||||||||| | ||||||||||| 
Sbjct  232  CTAGTGTGGAGGAGATACTT-AAGGATAAGGACAAGGCAAGCTTTAAAATATCCGGTTCA  290

Query  175  ACAAGTAAAAGTATCA  190
            |||||||||| |||||
Sbjct  291  ACAAGTAAAAATATCA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5