BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355442
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13710.1 | Symbols: | Pectin lyase-like superfamily protein... 2052 0.0
AT1G04680.1 | Symbols: | Pectin lyase-like superfamily protein... 641 0.0
> AT4G13710.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:7962432-7966461 FORWARD LENGTH=1980
Length=1980
Score = 2052 bits (1111), Expect = 0.0
Identities = 1207/1254 (96%), Gaps = 3/1254 (0%)
Strand=Plus/Plus
Query 205 AGGAAGCTGAAAACAGAGGAGTTTCAGAGCTTAAACAGCTCAACAATGGCGGCGACAAGG 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AGGAAGCTGAAAACAGAGGAGTTTCAGAGCTTAAACAGCTCAACAATGGCGGCGACAAGG 337
Query 265 CTTGATGGTGAA-C-C-ACAACAACAACACGCCGTTGCTGCTGATCCAGATATGGTTGCT 321
|||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 338 CTTGATGGTGAACCACAACAACAACAACACGCCGTTGCTGATGATCCAGATATGGTTGCT 397
Query 322 GATGAAGTCGCTAAGCTTGTTCAAATGAGTGAACAGAACAGGACAGCAAGAAGGAAGCTA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GATGAAGTCGCTAAGCTTGTTCAAATGAGTGAACAGAACAGGACAGCAAGAAGGAAGCTA 457
Query 382 GGATTCTTCTCATGTGGAACTGGTAATCCAATTGATGACTGTTGGCGTTGTGACCGTAAC 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GGATTCTTCTCATGTGGAACTGGTAATCCAATTGATGACTGTTGGCGTTGTGACCGTAAC 517
Query 442 TGGCACAAGAACCGTAAACGCCTTGCGGATTGTGGGATTGGTTTTGGAAGGAACGCAATT 501
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 518 TGGCACAAGAACCGTAAACGCCTTGCGGATTGTGGCATTGGTTTTGGAAGAAACGCAATT 577
Query 502 GGTGGTCGTGATGGACGCTTCTACGTTGTTACTGACCCTACTGATGAAGATGTTGTTAAT 561
|||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 578 GGTGGTCGTGATGGACGCTTCTACATTGTTACTGACCCGACTGATGAAGACGTTGTTAAT 637
Query 562 CCCAAACCTGGAACTCTACGCCATGCTGTCATCCAGGAGGAGCCTCTGTGGATTGTGTTC 621
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CCCAAACCTGGTACTCTACGCCATGCTGTCATCCAGGAGGAGCCTCTGTGGATTGTGTTC 697
Query 622 AAGAGGGATATGGTTATAGAGCTGAAACAGGAGCTGATCATGAACAGTTTCAAGACCATT 681
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 698 AAAAGGGATATGGTGATAGAGCTGAAACAGGAGCTGATCATGAATAGTTTCAAGACCATT 757
Query 682 GATGGCCGTGGCTCCAATGTCCATATAGCCAATGGTGCTTGCATCACCATTCAGTTTATA 741
|||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 758 GATGCCCGTGGCTCCAACGTCCATATAGCCAATGGTGCTTGCATCACCATCCAGTTTATC 817
Query 742 ACCAATGTCATCATTCATGGACTTCATATTCATGATTGCAAGCCTACTGGAAATGCAATG 801
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 818 ACCAATGTCATCATTCATGGTCTTCACATTCATGATTGCAAGCCTACTGGAAATGCAATG 877
Query 802 GTTAGAAGCTCGCCATCTCACTTTGGTTGGAGGACAATGGCTGATGGTGATGCAGTCTCC 861
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 878 GTTAGAAGCTCGCCATCTCACTTTGGTTGGAGGACAATGGCTGATGGTGATGCTGTCTCT 937
Query 862 ATTTTTGGATCATCTCATATCTGGATTGATCATAACTCTCTCTCCCACTGTGCTGATGGC 921
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 938 ATTTTTGGATCATCTCATATCTGGATTGATCATAACTCTCTCTCTCACTGTGCTGATGGC 997
Query 922 CTTGTTGATGCTGTCATGGGTTCTACTGCTATTACTGTTTCCAATAACCACTTTACCCAC 981
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 998 CTTGTCGATGCTGTCATGGGTTCTACTGCTATTACCGTTTCCAATAACCACTTTACCCAC 1057
Query 982 CACAATGAGGTGATGTTGCTTGGGCACAGTGACTCGTACACAAAAGATAAGCTAATGCAA 1041
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 1058 CACAATGAGGTGATGTTGCTTGGGCATAGTGACTCGTACACAAAGGACAAGCTGATGCAA 1117
Query 1042 GTGACCATTGCTTACAATCATTTTGGAGTCGGACTAGTTCAGAGAATGCCAAGGTGCAGA 1101
|| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1118 GTAACCATTGCTTACAACCATTTTGGAGAAGGACTGGTTCAGAGAATGCCAAGGTGCAGA 1177
Query 1102 CATGGGTATTTCCATGTGGTTAACAATGACTACACACACTGGGAGATGTACGCCATTGGT 1161
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1178 CATGGGTACTTCCATGTGGTTAACAACGACTACACACATTGGGAGATGTACGCCATTGGT 1237
Query 1162 GGGAGTGCAGAGCCAACCATCAACAGTCAAGGAAACAGATATGCTGCTCCAATGGACCGC 1221
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1238 GGGAGTGCAGAGCCAACCATCAACAGTCAAGGAAACAGATATGCTGCTCCCATGGACCGC 1297
Query 1222 TTCGCCAAAGAGGTGACGAAAAGAGTGGAGACAGATGCAAGTGAGTGGAAGAAGTGGAAT 1281
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1298 TTCGCCAAAGAGGTGACAAAAAGAGTAGAGACAGATGCAAGCGAGTGGAAGAAGTGGAAT 1357
Query 1282 TGGAGGTCAGAAGGAGACCTTCTACTGAATGGAGCATTCTTCAGGCCATCAGGAGCAGGA 1341
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 TGGAGATCGGAAGGAGACCTTCTACTGAATGGAGCATTCTTCAGGCCATCAGGAGCAGGA 1417
Query 1342 GCATCAGCTAGCTATGGAAGAGCATCAAGCTTAGCAGCTAAACCATCATCTATGGTCGAC 1401
||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1418 GCATCTGCTAGCTATGGACGAGCCTCAAGCTTAGCAGCTAAACCATCATCTATGGTCGAC 1477
Query 1402 ACTATTACCTCTACTGCAGGAGCACTAGGTTGCCGTAAGGGCAGACCTTGTTAG 1455
||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1478 ACTATTACCTCTACTGCAGGAGCACTAGGTTGCCGTAAGGGAAGACCTTGCTAG 1531
Score = 276 bits (149), Expect = 5e-73
Identities = 157/161 (98%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTCTTCTCAGAAACTGATCAGTGTTTGTGTCGCTCTGCTCGTCGTTTTAGCT 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 119 ATGGCGTCGTCTTCTCAGAAACTGATCAGTGTTTGTGTCGCTGTGCTCGTCGTCTTAGCT 178
Query 61 CTCACGGCGATGATTTTCCGGAACAGTGAAATCTCTCTCTCCAGGAAGCTGAAAACAGAG 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 CTCACGGCGATGATTTTCCGGAACAGTGAAATCTCTCTCTCTAGGAAGCTGAAAACAGAG 238
Query 121 GTGATTCAGAGCTCAAATAGCTCAACAATGGCGGCGACAAG 161
||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 GTGATTCAGAGCTCAAATAGCTCAACAATGGCGGCGATAAG 279
> AT1G04680.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:1303529-1307884 REVERSE LENGTH=1923
Length=1923
Score = 641 bits (347), Expect = 0.0
Identities = 748/941 (79%), Gaps = 30/941 (3%)
Strand=Plus/Plus
Query 373 AGGAAGCTAGGATT-CTTCT-CATGTGGAACTGGTAATCCAATTGATGACTGTTGGCGTT 430
||||| ||||| || ||| | | || ||||| || || || || || || |||||||| |
Sbjct 312 AGGAAACTAGG-TTACTT-TACTTGCGGAACAGGAAACCCTATCGACGATTGTTGGCGAT 369
Query 431 GTGACCGTAACTGGCACAAGAACCGTAAACGCCTTGCGGATTGTGGGATTGGTTTTGGAA 490
|||||| || ||||||||||||||||||||||| |||||||| || || || |||||||
Sbjct 370 GTGACCCCAATTGGCACAAGAACCGTAAACGCCTAGCGGATTGCGGTATCGGATTTGGAA 429
Query 491 GGAACGCAATTGGTGGTCGTGATGGACGCTTCTACGTTGTTACTGACCCTACTGATGA-A 549
| ||||| || ||||||||||||||||| |||||||| || |||||||| | || || |
Sbjct 430 GAAACGCGATCGGTGGTCGTGATGGACGATTCTACGTAGTCACTGACCCAAGAGACGACA 489
Query 550 GATGTTGTTAATCCC-AAACCTGGAACTCTACGCCATGCTGTCATCCAGGA-GGAGCCTC 607
|| ||||| ||| | ||| || ||| |||| || || || ||||| || || || |
Sbjct 490 -ATCCGGTTAA-CCCTAGACCGGGGACTTTACGTCACGCCGTGATCCAAGACCGA-CCAC 546
Query 608 TGTGGATTGTGTTCAAGA-GGGATATGGTTATAGAGCTGAAACAGGAGCTGATCATGAAC 666
| ||||| || ||||| | | || ||||| || |||| ||||| ||||| ||| | |||
Sbjct 547 TATGGATCGTTTTCAA-ACGTGACATGGTGATTCAGCTAAAACAAGAGCTTATCGTTAAC 605
Query 667 AGTTTCAAGACCATTGATGGCCGTGGCTCCAATGTCCATATAGCCAATGGTGCTTGCATC 726
|||||||| || || ||||| |||||| | || || || || || || |||| |||||||
Sbjct 606 AGTTTCAAAACGATCGATGGACGTGGCGCAAACGTTCACATTGCTAACGGTGGTTGCATC 665
Query 727 ACCATTCAGTTTATAACCAATGTCATCATTCATGGACTT-CATATTCATGATTGCAAGCC 785
|| ||||||||| | || ||||| ||| |||| ||| || ||||||||||| || || ||
Sbjct 666 ACGATTCAGTTTGTGACGAATGTGATCGTTCACGGA-TTGCATATTCATGACTGTAAACC 724
Query 786 TACTGGAAATGCAATGGTTAGAAGCTC-GCCATCTCACTTTGGTTGGAGGACAATGGCTG 844
||||| || || ||||| |||||||| | | | || ||||| |||||||||||||| |
Sbjct 725 AACTGGTAACGCTATGGTGAGAAGCTCAGAGA-CGCATTTTGGGTGGAGGACAATGGCAG 783
Query 845 ATGGTGATGCAG-TCTCCATTTTTGGATC-ATCTCATATCTGGATTGATCATAACTC-TC 901
||||||| || | | || || |||||||| | |||| | ||||||||||||||||| |
Sbjct 784 ATGGTGACGC-GATTTCGATCTTTGGATCGA-GTCATGTATGGATTGATCATAACTCGT- 840
Query 902 TCTCCCACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGTTCTACTGCTATTACTGTTT 961
| ||||| || |||||||| ||||| || || |||||||| || || || ||||| | |
Sbjct 841 TGTCCCATTGCGCTGATGGGCTTGTGGACGCAGTCATGGGCTCAACCGCGATTACCATCT 900
Query 962 CCAATAACCACTTTACCCACCACAATGAGGTGATGTTGCTTGGGCACAGTGACTCGTACA 1021
| || |||||||| || ||||| || ||||| |||||||| || || |||||||||||||
Sbjct 901 CTAACAACCACTTAACTCACCATAACGAGGTTATGTTGCTAGGACATAGTGACTCGTACA 960
Query 1022 CAAAAGA-TAAGCTAATGCAAGTGACCATTGCTTACAATCATTTTGGAGTCGGACT-AGT 1079
| || ||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 961 TGAGGGACAAAGCT-ATGCAAGTGACCATTGCTTACAATCATTTTGGAGTCGGACTTA-T 1018
Query 1080 TCAGAGAATGCCAAGGTG-CAGACATGGGTATTTCCATGTGGTTAACAATGACTACACAC 1138
||| |||||||| ||||| | |||| ||||| |||||||| |||||||| |||||||| |
Sbjct 1019 TCAAAGAATGCCGAGGTGTC-GACACGGGTACTTCCATGTTGTTAACAACGACTACACTC 1077
Query 1139 ACTGGGAGATGTACGCCATTGGTGGGAGTGCAGAGCCAACCATCAACAGTCAAGGAAACA 1198
||||||| |||||||| || ||||| || ||| | || || ||||||||||||||||||
Sbjct 1078 ACTGGGAAATGTACGCAATAGGTGGTAGCGCAAACCCGACAATCAACAGTCAAGGAAACC 1137
Query 1199 GATATGCTGCTCCAATGGACCGCTTCGCCAAAGAGGTGACGAAAAGAGTGGAGACAGATG 1258
| ||||| || |||| ||| ||| || |||||||||||||| |||||||| ||| |
Sbjct 1138 GCTATGCCGCCCCAAAAAACCCCTTTGCTAAAGAGGTGACGAAGAGAGTGGACACACCGG 1197
Query 1259 CAAGTGAGTGGAA-GAAGTGGAATTGGAGGTCAGAAGGAGA 1298
| ||| | ||||| | | ||||||||||| || ||||||||
Sbjct 1198 CTAGTCATTGGAAAGGA-TGGAATTGGAGATCGGAAGGAGA 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5