BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355445
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13690.1 | Symbols: | unknown protein; Has 37 Blast hits to... 977 0.0
> AT4G13690.1 | Symbols: | unknown protein; Has 37 Blast hits
to 37 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa
- 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes
- 6 (source: NCBI BLink). | chr4:7953352-7955769 REVERSE
LENGTH=1332
Length=1332
Score = 977 bits (529), Expect = 0.0
Identities = 699/775 (90%), Gaps = 35/775 (5%)
Strand=Plus/Plus
Query 1 ATGAAGAAGCCAATTCCTAAAATTAGGGTTTTTGGTCAGCGATCAATTGCTTCTTCCTTC 60
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 273 ATGAAGAAACCAATTCCTAAAATTAGGGTTTTTGGTCAGCGATCGATTGCTTCTTCCTTC 332
Query 61 TTGAATCTGAGCTCGATTCCTGTCGATGGCCCTCCGGAAAATCCGTCGGAGAAAGTGGAG 120
||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 333 CTGAATCTCAGCTCGATTCCTGTCGATAATACTTCGGAAAATCCGCCGGAGAAAGTGGAG 392
Query 121 AATTGTAGCAAACTGAACAAATCAGTTCTGTTTAAGCCCAACAACAACACTGAGGAGAGG 180
||| | ||||| |||||||||||||| ||||||||| || | |||||| ||||||| ||
Sbjct 393 AATCGCAGCAAGCTGAACAAATCAGTGCTGTTTAAG-CC-A-AACAACTTTGAGGAGCGG 449
Query 181 CTAAGACCATTCACTTCTTTGGTTAGCTCTAAAGATGTGACTCAAATCTCTCATGGGTTT 240
||||||||||| |||||||||||||||||||||||| |||||| |||||||| |
Sbjct 450 CTAAGACCATTTACTTCTTTGGTTAGCTCTAAAGAT-CGACTCATATCTCTCA------T 502
Query 241 GGGATGGAGAGAAAAGCGAGGGAAGAAAGGAAAAACGGAGATGGTGGTCTTGAAAAGATG 300
| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 503 ---A--GAGAGAAAAGCGAGGGAAGAAAAGAAAAACGGAGATGGTGGTCTAGAAAAGATG 557
Query 301 ATGCTTCAGCAGTTCAAGCCAAGAGAGACTCAGGTAAGTGAAGAAGTGAGTAGAGATGTA 360
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 558 ATGCTTCAGCAGTTCAAGCCAAGAGAGATTCAGATTAGTGAAGAAGTGAGTAGAGATGTA 617
Query 361 ACTGGTGAGGTGAGTCTTGAG-TCGTTGGATCAAACCG-TAGCTGAAGAAACGGA--GCA 416
|| ||||| |||| ||||||| || |||||||||| | | |||||||||||||| ||
Sbjct 618 ACAGGTGATGTGAATCTTGAGCCCG-TGGATCAAACAGCT-GCTGAAGAAACGGATCACA 675
Query 417 ----TCCGTACTCCACTGAAATCAATGAAGATATCATTGTGAGGGACGATAAAACATCAA 472
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGGCTCCGTACTCCACAGAAATCAATGAAGATATCATTGTGAGGGACGATAAAACATCAA 735
Query 473 AGAAAAGAAAAGATCCTTTTGAAGGTATGGAGAGCATCG-GTAGAACGGGAAAG-CCTGT 530
||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 736 AGAAAAGAAAAGATCCTTTTGAAGGTATGGAGAGCAT-GAGTAGAACGGGAAAGTCC-GT 793
Query 531 TATAGTCTTTGGAGACAACTCAAAGGTATCAAAGTCAATGCAAAGGGAAAGAGAAAGAGG 590
||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 794 TATGGTCTTTGGAGACAATTCAAAGGTATCAAAGCCAATGCAAAGGGAAAGAGAAAGA-- 851
Query 591 AAGAGGAAGCAACAACATTAGTAAGAAGCAGAGACCCACATACAACCATTATGCAAATGG 650
| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 852 A-GA--A-GCAACAACAATAGTAAGAAGCAGAGACCCATATACAACCATTATGCAAATGG 907
Query 651 TTCAGGATGGTGGGACTGTGATATGGAAGGTGTTGATTCAGAAGAAGTGGGACATAGTGA 710
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 908 TTCAGGATGGTGGGACTGTGATATGGAAGGTGTTGACTCGGAAGAAGTGGGACATAGAGA 967
Query 711 AGTGTGGGAAGGAGTTGGCTCAACAACATTCGGAGATATAGTTGATTGGCACTAA 765
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 968 AGTGTGGGAAGGAGTTGGCTCGACAACATTCGGAGATATAGTTGATTGGCACTAA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5