BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355453
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13630.1 | Symbols: | Protein of unknown function, DUF593 |... 765 0.0
> AT4G13630.1 | Symbols: | Protein of unknown function, DUF593
| chr4:7933908-7936516 REVERSE LENGTH=2145
Length=2145
Score = 765 bits (414), Expect = 0.0
Identities = 511/558 (92%), Gaps = 6/558 (1%)
Strand=Plus/Plus
Query 1381 CTGAGTGATGTAGAACTGAAAGAAAGAGAGGAGGGTGTCACTTCATTTCCAGAACTAGTA 1440
||||||||| |||||||||||||||||||||| |||| |||| || | |||||||||||
Sbjct 1406 CTGAGTGATATAGAACTGAAAGAAAGAGAGGAAGGTGAAACTTTATATGCAGAACTAGTA 1465
Query 1441 TCAAGAACTAGCGACATCGCTGTTACTAAGAATCTTGGTGAGGAATCC-CACGACATTGA 1499
||||||||||||||||| |||||| ||||||| ||| |||||| | || |||||||||||
Sbjct 1466 TCAAGAACTAGCGACATTGCTGTTTCTAAGAAGCTTTGTGAGG-ACCCTCACGACATTGA 1524
Query 1500 TGGCCATGTACATGATATCCATGTAGTGACCGATGAAGATAACAAAGCGCAACTGAATGT 1559
| | ||||||||||| |||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 1525 TTGTCATGTACATGACATCCATGTAGTGACTGATGAAGATAACAAGGGGCAACTGAATGT 1584
Query 1560 TCCTTTTGACCATGCCA-TTAGCGATCTGAAACTGGATAGATCACAAAGTGTTTCAGATA 1618
||||| ||||||||||| | || |||||||||||||| ||||||||||||||||||||||
Sbjct 1585 TCCTTCTGACCATGCCACTCAG-GATCTGAAACTGGACAGATCACAAAGTGTTTCAGATA 1643
Query 1619 CAAGTTATGTACTTCCACCTGGGAAAAGTAACATGTCTCCCAATATGCGCAGAAATTCAA 1678
||||||||| | |||||| |||||||||||||||||| |||||||||| ||||||||||
Sbjct 1644 CAAGTTATGCATTTCCACAAGGGAAAAGTAACATGTCTACCAATATGCGAAGAAATTCAA 1703
Query 1679 TGTCAGCTATTGACTATGAAAGACTGAAAATAGAGAGTGAAGTTGGGTTGCTGAGAGGAC 1738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1704 TGTCAGCTATTGACTATGAAAGACTGAAAATAGAGAGTGAAGTTGGGTTGCTGAGAGGTC 1763
Query 1739 GGTTAAGAGCTGTGCAAAAGGGAAGAGAGAAGATCAGTTTCTCTTCCAAAGAACAGAGCA 1798
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1764 GGTTAAGAGCTGTACAAAAGGGAAGAGAGAAGATCAGTTTTTCTTCCAAAGATCAGAGCA 1823
Query 1799 AATCGCAGATACAGCGTCGTGGAGATAAAACAAGCCGGTTTTGGGAGGCCAGAAGATCCG 1858
|||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1824 AATCGCAGGTACAGCGTTGTGGAGATAAAACAAGCCGGTTTTGGGAGGCTAGAAGATCTG 1883
Query 1859 GACCT-TTCAACTCTTCTAGCCCTTCATCCACAATGGTCAAGGCGATGTCTATGACACTT 1917
||| | || | ||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 1884 GACATCTTGA-CTCTTCTAGCCCTTCATCCACAATGGTAAAGGCTATGTCTATGCCACTG 1942
Query 1918 GACCTGCATAGTGCTTGA 1935
||||||||||||||||||
Sbjct 1943 GACCTGCATAGTGCTTGA 1960
Score = 686 bits (371), Expect = 0.0
Identities = 439/472 (93%), Gaps = 4/472 (1%)
Strand=Plus/Plus
Query 756 TGGTATGACACAAAAGACGATTGAGAT-TCTAGAACAAGTGCTTGCGGAAGAACGAGCTG 814
||||||| ||| | |||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct 895 TGGTATGGTACAGAGGACGGTTGAGATGTC-AGAACAAGTGCTTGGGGAAGAACGAGCTG 953
Query 815 CTCATGCTTCATTAGCTCTTGAACTCGAGAAAGAGAGAAATGCTGCTGCATCTGCTGCGG 874
| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 954 CACGTGCTTCGTTAGCTCTTGAACTTGAGAAAGAGAGAAATGCTGCTGCATCTGCTGCAG 1013
Query 875 ATGAGGCTTTGGGTATGATATTGCGGTTACAAGAGGAGAAA-GCGTCAATAGAGATGGAA 933
|||||||||| ||||||||||| ||||| ||||| || ||| ||||| ||||||||||||
Sbjct 1014 ATGAGGCTTTAGGTATGATATTACGGTTGCAAGAAGA-AAAGGCGTCGATAGAGATGGAA 1072
Query 934 GCTAGGCAATATCAGCGGATGATAGAAGAAAAGTCTGCTTTTGATGCGGAAGAGATGATT 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1073 GCTAGGCAATATCAGCGGATGATAGAAGAAAAGTCTGCTTTTGATGCGGAAGAGATGAGT 1132
Query 994 ATTCTCAAAGAAATTTTGCTTAGGAGGGAGAGGGAGAAACATTTTCTGGAGAAGGAAGTT 1053
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 ATTCTTAAAGAAATTTTGCTTAGGAGGGAGAGGGAGAAACATTTTCTGGAGAAGGAAGTT 1192
Query 1054 GATACCTATAGGCAAATGTTTCTTGAGACTGAGCAACCTCACAATACGCCAGATTCAAAA 1113
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1193 GATACCTACAGGCAAATGTTTCTTGAGACTGAGCAACCTCACAATACTCCAGATTCTAAA 1252
Query 1114 CCAGCTCGAATCGAAAGATTGCAAACGCCACAACAAATTACTGAATCATGGGATGACATG 1173
||||||| ||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||
Sbjct 1253 CCAGCTCAAATCGAAAGATTGCAGACGCCGCAACAGATTACTGAACCATGGGATGACATG 1312
Query 1174 GAGACTGCGGATGTCTCTTTTGGATTTGAGATCTTCACTAATCAGATGGACA 1225
||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1313 GAGACTGTGAATGTCTCTTCTGGATTTGAGATCTTCACTAATCAGATGGACA 1364
Score = 549 bits (297), Expect = 3e-155
Identities = 470/547 (86%), Gaps = 37/547 (7%)
Strand=Plus/Plus
Query 1 ATGCGTTGCCAGGAGGTAAGATCATGGACATTTAAAGGTTTAGTGGCTGCGTTTCTTGAT 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 251 ATGCGTTGCCAGGAGGTAAAATCATGGACATTTAAAGGTTTAGTGGCTGCGTTTATCGAT 310
Query 61 CTTTCTGTTGCGTTTTCGCTGCTTTGCGCATC-TTCTCTCGTTTATGTAACATCGAAGTT 119
||||| |||||||||||||| ||||||||||| || | ||||||||||||||||||||||
Sbjct 311 CTTTCCGTTGCGTTTTCGCTACTTTGCGCATCGTT-TATCGTTTATGTAACATCGAAGTT 369
Query 120 CCTCGGTTTATTTGGTTTAGCCCTCCCATGTCCTTGTGATGGTTTATTCAGTGAGCCACA 179
|||||||||||||||||||| ||| |||||||||||||||||| ||| |||| |
Sbjct 370 CCTCGGTTTATTTGGTTTAGACCTACCATGTCCTTGTGATGGTCTATACAGT--G----- 422
Query 180 TAAGTGTTTTCAAGAGAGTTTAGGGAATCTTCCTGTGAAAAAGATCAGTTCTGTTCAAAG 239
|||||||||||||||||||| |||||||||| || ||||||||| ||||||||||||
Sbjct 423 --AGTGTTTTCAAGAGAGTTTAAGGAATCTTCCGGTTAAAAAGATCTCTTCTGTTCAAAG 480
Query 240 ATCTGTGAGAAATAGAACGCCTTTTGATTCGATTTTATGTAAAGAAGTTAATGGTGGTTG 299
|||||| | ||||||||| ||||||||||| | || ||| | ||| ||
Sbjct 481 ATCTGTTAAAAATAGAACACCTTTTGATTC-A-ATTCTGT-----A--TAA-------TG 524
Query 300 TGTTGGAAAGAAGAGGAAAGGAGAGCGTAAG-CGCGTTGAGTTGGAAGAAGAGGTGTCTA 358
| |||||||||||| ||| | |||||| || || ||| |||||||||| ||||| ||||
Sbjct 525 -G-TGGAAAGAAGAGAAAATGTGAGCGT-AGACGTGTTCAGTTGGAAGATGAGGTATCTA 581
Query 359 G---TACTCCTTCTGTTGGAAAGATTGAG---AAGGCTTCAGGTTTTGATCTTTTAACCG 412
| ||||||||||||||||||| ||||| ||||||||||| || ||||||||||| |
Sbjct 582 GTACTACTCCTTCTGTTGGAAAGTTTGAGAATAAGGCTTCAGGGTTCGATCTTTTAACTG 641
Query 413 CGCAAAGTTTGAAAAAAGGAAGCTTTAAAGTTAAGAGTAAGCGGCTCAGCTTCCATAGGT 472
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 642 CGCAAAGTTTGAAAAAAGGAAGCTTTAAAGTTAAGAGTAAGCGGCTTAGCTTCCATAGGT 701
Query 473 CGCCGTATGGTTTCAAGAACCATTTTCAAGGTAGTTTAGGCCATAAGAACTCTGAGGGAT 532
|||||||||||||||||||||||| ||| || ||||||||| ||||| || ||||||||
Sbjct 702 CGCCGTATGGTTTCAAGAACCATTACCAAAGTTGTTTAGGCCTTAAGAGCTTTGAGGGAT 761
Query 533 CAAATGA 539
|| ||||
Sbjct 762 CATATGA 768
Score = 137 bits (74), Expect = 3e-31
Identities = 93/102 (91%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 567 TGATGAAAATGATCCTCTTCTTGTGAAGTGGAAAGATAGTGGAACAA-CCTTGGAGGACG 625
||||||||||||||||||||||||||| | || |||||||||| || | |||||||| |
Sbjct 766 TGATGAAAATGATCCTCTTCTTGTGAACTCCAATGATAGTGGAA-AAGCATTGGAGGATG 824
Query 626 TGTCCTTGCGGAAAAGTGTTTCACTAAGTTCTGTTGGGTGTG 667
|||| |||||||||||||||||||||||||||||||||||||
Sbjct 825 TGTCGTTGCGGAAAAGTGTTTCACTAAGTTCTGTTGGGTGTG 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95832840405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5