BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355465

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13540.1 | Symbols:  | unknown protein; INVOLVED IN: N-termi...   843    0.0  


> AT4G13540.1 | Symbols:  | unknown protein; INVOLVED IN: N-terminal 
protein myristoylation; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast 
hits to 3455 proteins in 431 species: Archae - 39; Bacteria 
- 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses 
- 38; Other Eukaryotes - 1783 (source: NCBI BLink). | chr4:7869874-7870750 
FORWARD LENGTH=801
Length=801

 Score =  843 bits (456),  Expect = 0.0
 Identities = 581/639 (91%), Gaps = 18/639 (3%)
 Strand=Plus/Plus

Query  1    ATGGGTGGCTCTACAAGCAAGCAGGAGAGAAACAGTAGTAAGAGACGCATCAAGGTGAAA  60
            |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct  23   ATGGGTGGTTCTACAAGCAAGGATGAGAGAAACAGTAGTAAGAGACGCATCAAGGTGAAA  82

Query  61   TCAAATGAACAACagagaaggagagaaacaagaagagagcttgatgagaaagagagagTG  120
             ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  83   GCAAATG---AACAGAGAAGGAGAGAAACAAGAAGAGAGCTTGATGAGAAAGAGAGAGTG  139

Query  121  ATTTTGGC-TCTGAAGATGGCagagacagagtggaggaaagagaggaagagactgagaga  179
            |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  140  ATTTTGGCGT-TGAAGATGGCAGAGACAGAGTGGAGGAAAGAGAGGAAGAGACTGAGAGA  198

Query  180  ggaggtggagagactgagacagaagatggaagagaaagaaga-ggCAAAAGTGAAACAAC  238
            ||| ||| |||| ||||||||||||||||||||||| ||||| || ||| | ||||||||
Sbjct  199  GGAAGTGAAGAGGCTGAGACAGAAGATGGAAGAGAAGGAAGAAGG-AAAGGCGAAACAAC  257

Query  239  ACGAGTGGGAATGGGTTGTGGAACAGATGTGCTTAGAGAGAGCGGTGAGGGAAGAAGCCG  298
            |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |
Sbjct  258  ACGAGTGGGAATGGGTCGTGGAACAGATGTGTTTAGAGAGAGCAGTGAGGGAAGAAGCTG  317

Query  299  TGGAGAGGTGGAAACAACTCTATTTTGCTATCAAGAATGAGCTTGATGATCTCATCCACA  358
            ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  318  TGGAGAGGTGGAAGCAGCTCTACTTTGCTATCAAGAATGAGCTTGATGATCTCATCCACA  377

Query  359  CAACATATGGAGAGGCATTGAGACAGAAACCTCAAGAAGAAAT---A--G----TGCAAG  409
            ||||||||||||||||| ||||||||||||| ||||||||| |   |  |    ||||||
Sbjct  378  CAACATATGGAGAGGCACTGAGACAGAAACCGCAAGAAGAAGTTGCAAAGGCAGTGCAAG  437

Query  410  AACTGAGGAAGGAAGTTAAAGTTAGGGGAGAAACTATTGAGACACTCAA-GGGAAGAATA  468
            |||| || ||||||||||||| |||||||||||| ||||||||||| || |||| |||||
Sbjct  438  AACTCAGAAAGGAAGTTAAAGCTAGGGGAGAAACCATTGAGACACTGAAAGGGA-GAATA  496

Query  469  GCTTTGATGGAGAAACAACGAAATGAGAAGGAAAGAGAGATTGATTTACTGAGGCAGAGT  528
              ||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||
Sbjct  497  AATTTGATGGAGAAACAACAAAATGGGAAGGAAAGAGAGATTGACTTACTGAGACAGAGT  556

Query  529  CTGCGTATCCTCGGCGGTATCAGCGGGAGGAACAAAGCACCGTCATCTACTACCAGAAGC  588
            ||||||||||||||||||| |||||||| |||||| ||||  |||||||||||||||| |
Sbjct  557  CTGCGTATCCTCGGCGGTAGCAGCGGGAAGAACAAGGCACTATCATCTACTACCAGAAAC  616

Query  589  CTGCCAGTATTCAAAACAAAATTCATTGGGCGTAAATAA  627
            ||| |||||||||||||||||||||| ||| ||||||||
Sbjct  617  CTGACAGTATTCAAAACAAAATTCATCGGGTGTAAATAA  655



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5