BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355482

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56500.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   424    4e-118


> AT5G56500.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr5:22873791-22877396 FORWARD LENGTH=2318
Length=2318

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 270/290 (93%), Gaps = 2/290 (1%)
 Strand=Plus/Plus

Query  38    AGAG-GTGTGAACAGATCACGAATCTTATTGAGGCTACTGAACAAGACTATGAAAAGGAA  96
             |||| || ||||||||||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct  1275  AGAGAGT-TGAACAGATCAAGAATCTTATCGAGGCTGCTGAACAAGACTATGAAAAGGAA  1333

Query  97    AAGCTTAACGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCA  156
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1334  AAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCA  1393

Query  157   CAAACCGAGACAGAGCTTAAGGAGAATAAATTGAGAGTTGAAGATGCTCTTAACGCTACA  216
             ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct  1394  CAAACTGAGACAGAGCTTAAGGAGAAGAAATTAAGAGTTGAAGATGCTCTTAATGCTACA  1453

Query  217   AAGGCGGCTGTGGAAGAAGGTATCGTTGTTGGAGGAGGATGCACTCTGCTAAGACTTGCA  276
             ||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct  1454  AAGGCTGCTGTGGAAGAAGGTATTGTTGTTGGCGGAGGATGTACTCTGCTAAGACTTGCA  1513

Query  277   TCAAAAGTGGATGCCATTAAAGACACTCTAGCAAAAAATGAAGAAAAGGT  326
             || |||||||| || |||||||| |||||||||||  |||||||||||||
Sbjct  1514  TCGAAAGTGGACGCTATTAAAGAGACTCTAGCAAACGATGAAGAAAAGGT  1563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5