BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355491
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69680.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II... 876 0.0
> AT1G69680.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem
II reaction center PsbP family protein | chr1:26204805-26206928
FORWARD LENGTH=1202
Length=1202
Score = 876 bits (474), Expect = 0.0
Identities = 529/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 1 ATGTCCGGTGAGTTGTGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCTTCTTC 60
||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 234 ATGTCTGTTGAGTTATGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 293
Query 61 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTTCAGATCATCAGGAAGTGTTT 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 294 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 353
Query 121 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGACTGAGGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 354 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGGCTGAGGTT 413
Query 181 GGTGACATTGGCAGTGCTTCTTGGTTCCTTAATGATCTTGCGCGTGAGCAAGATGCTGAA 240
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 414 GGTGACATTGGCAGTGCCTCTTGGTTCCTTAATGATCTTGCGAGTGAGCAAGATGCTGAA 473
Query 241 GGATTTCTGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCCTTCAGAAAC 300
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 474 GGATTTCAGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 533
Query 301 ATCCCTGCCATTGGGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGGA 360
||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATCTCTGCTGTTGCGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGGA 593
Query 361 AGAGAAGCACAAAACCTAGTGAGGGTGTATGTGGCAAATCTTCGTCTTAAGGG-GATTGA 419
||||||||||||||||||||||| || |||||||||||| ||||||||||||| | ||||
Sbjct 594 AGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATATTCGTCTTAAGGGAG-TTGA 652
Query 420 TACTGATGTCTTAGTGACTGCATATGAACCTATCTTGATAAACCCTCTGAGCGAAAGCGT 479
||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 653 TACAGATGTCTTAGTGACTGCCTATGAACCTATCCTGATAAATCCTCTGAGCGAAAGCGC 712
Query 480 GGATGCTGTGGGATCTGGTTTAGTTGTCCCAGCTTCTCAATCTGGAAAAATGCCAATGTG 539
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 713 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAAAAATGCCAATGTG 772
Query 540 TGATGTCATTAAACAA 555
|||| |||||||||||
Sbjct 773 TGATATCATTAAACAA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5