BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355494
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT5G32460.1 | Symbols: | Transcriptional factor B3 family prot... 695 0.0
> AT5G32460.1 | Symbols: | Transcriptional factor B3 family protein
| chr5:12081803-12084148 REVERSE LENGTH=1593
Length=1593
Score = 695 bits (376), Expect = 0.0
Identities = 458/497 (92%), Gaps = 8/497 (2%)
Strand=Plus/Plus
Query 870 AGATAATCGGTTTACTGTCAGGAGAGGCTGGAGAGGTTTCTGCTGCAGGAATGGGCATAA 929
|||| ||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct 1047 AGATGATCGGTTTACTGTCAGGCGAGGCTGGAAAGCTTTCTGCTGCAGGAATGAGCATAA 1106
Query 930 AACTGGTTGTTTCTTGAGGCTCATATTGGTCCGAAATGGAAAAACACCAGTGCTCCGGAT 989
|||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 1107 AACTGGTTGTTTCTTGAGGCTCATATTGGTCCAAAATGGAAAAACACCCGTACTCCGGAT 1166
Query 990 TTTTCCTTTGGAGA-AGGATGAGAGCAGCATTG-GAAAGAACTCGAAGGAGATCAAGCAA 1047
|||||||||||||| | |||||| |||||||| ||| |||||| ||| |||| ||||||
Sbjct 1167 TTTTCCTTTGGAGAGAT-ATGAGAACAGCATTGCGAA-GAACTCTAAGAAGATTAAGCAA 1224
Query 1048 GAAGTAGAACATGAGTCTGCGAAAGAAGAGAAGAACGTGGAATCATTGTCTTTGTCAGAT 1107
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1225 GAAGTAGAATATGAGTCTGCGAAAGAAGAGAAGAACCTGGAATCATTGTCTTTGTCAGAT 1284
Query 1108 AATTCTAGCTTTGTGGTATCTGTCACAGTTTCTAATCTAAGGGAAGATATACTGTATCTT 1167
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1285 AATTCTAGCTTTGTGGTATCTGTCACAGTTTCTAATCTAAGTGAAGATATACTGCATCTT 1344
Query 1168 CCAATAAGGCTTTCAAGATCAAACATACTGGACAAAAAATTTCACGAGATAAGTTT-GAT 1226
|||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||
Sbjct 1345 CCAATAAGGCTTTCAAGATCAAACTTACTGGACAAAAAAATTCACGAGATA-GTTTTGAT 1403
Query 1227 GAACAAACAGGGAAGAACATGGACGTTAAGTTTAAAATACAGTAAGTCCTCCGGTAAGTT 1286
||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||| |||
Sbjct 1404 GAACAAAGAGGGAAGAACATGGATATTAAGTTTAAAATACAGCAAGTACTCCGGTAGGTT 1463
Query 1287 TAGGATCACACACGGCTGGAAAAGTTTCTGCGAAGCGAATGGTCAAAA-CGCTGGATGTA 1345
||| ||||||| ||||||||||||||||||||| ||||| |||||||| | |||||||||
Sbjct 1464 TAGAATCACACGCGGCTGGAAAAGTTTCTGCGAGGCGAACGGTCAAAAAC-CTGGATGTA 1522
Query 1346 CCTTCTTATTCAACCTG 1362
|||||||| |||| |||
Sbjct 1523 CCTTCTTACTCAAGCTG 1539
Score = 632 bits (342), Expect = 3e-180
Identities = 409/441 (93%), Gaps = 6/441 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATTCAATGTTCTCTTCTTCGGCCAAGCCACACTTCTTGAAGCCTATTCTTCCA 60
||| || || |||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1 ATGACTGATGCAATGTTCTCTTCTTCGGCCAAGCCACACTTCATCAAGCCTATGCTTCCA 60
Query 61 GGCTTCAAAACCTATATT-TTGATTCCTAAAGCTTTTTATTCGAAATACTTAGAGGGAAG 119
|||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 GGCTTCGAAACCTATATTGTT-ATTCCTAAAGCTTTTTACTCGAACTACTTAGAGGGAAG 119
Query 120 ACAAGAGGGAAACGCTGCAGAACTTAGATCAGACGCGTCGGAGATCACCTGGAATATTAA 179
|||||||||||||||||||||||| ||||||||||| |||||||||| ||||| || ||
Sbjct 120 ACAAGAGGGAAACGCTGCAGAACTGAGATCAGACGCCACGGAGATCACTTGGAAAATAAA 179
Query 180 GATAGACGGCCGAAGAATGACCAAAGGATGGGAAGAATTTGCGGTGGGTCACAATCTTCA 239
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 180 GATAGACGGCCGAAGAATGACCAAAGGGTGGGAAGAATTTGCGGTGGCTCACAATCTTCA 239
Query 240 GGTCGGCGACATTCTTGTTTTCAGACACGAAGGGAATCTCTTGTTTCATGTCACACCTTT 299
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GGTCGACGACATTCTTGTTTTCAGACACGAAGGAAATCTCTTGTTTCATGTCACACCTTT 299
Query 300 TGGACTGAGTTGCTGTGAGATACTTTACTCACAGA-ATGACGAGAAAGTTGTCAAAGACA 358
||||||||||| |||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 300 TGGACTGAGTTTTTGTGAGATACTTTACTCACAGAGA-GACGAGAAAGATGTCAAAGACA 358
Query 359 AGACGGGAAAGGTTACACGATATAAAACGGTGAAGAAAA-CGGCAAAAAATGAGTGTTCA 417
|||||||||||||||| ||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 359 CGACGGGAAAGGTTACAAGATCTAGAACGGTGAAGAAAAACGG-AAAAAATGAGTGTTCA 417
Query 418 TCAGTGGACACTGATTTTGTG 438
|||||||||||||||||||||
Sbjct 418 TCAGTGGACACTGATTTTGTG 438
Score = 446 bits (241), Expect = 4e-124
Identities = 297/323 (92%), Gaps = 7/323 (2%)
Strand=Plus/Plus
Query 554 GAAAACCACCCGTGCTCCGGATTTATCCTTTGGAGAGAGATGAGGACAACATTGGAAACC 613
||||| |||||||||||||||||| |||||||||||| |||||||||||||||| ||| |
Sbjct 689 GAAAAACACCCGTGCTCCGGATTTTTCCTTTGGAGAGGGATGAGGACAACATTGAAAAAC 748
Query 614 ACTCGAAGAAGATTAAGCAAGAAGTAGAACATGA-GA--CTGTGAAAGAAGAGACGAATG 670
|||| |||||| |||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 749 ACTCAAAGAAGGTTAAGCAAGAAGTAGAGCATGAGGAGTCTGTGAAAGAAGAGACGAATG 808
Query 671 TGGAATCAGGAAAGCTTAAAAGAGATGGATTACTGAAGAAAGATCCACAAAAAGT-GTGT 729
|||||||||||||||||||||||||| |||||||| |||||||||| |||||| | ||||
Sbjct 809 TGGAATCAGGAAAGCTTAAAAGAGATAGATTACTGCAGAAAGATCC-CAAAAATTTGTGT 867
Query 730 TCTTCATCACACGACAC-AATCTTTGTGGTCCCTGGCACAGCTTCAAACCAACGAAATGA 788
||| ||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 868 TCTACATCACAAGACACTAAT-TTTGTGGTCCCTGTCACAGCTTCAAACCAACGACATGA 926
Query 789 TTCATTTCATCTTCCAAAAGGTTTTACTACCTCAAGTGGTCTGAGCAAACTGTGCAAGAA 848
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 927 TTCATTTCATCTTCCAAAAGGTTTAACCACCTCAAGTGGTCTGAGTAAACTGTGCAAGAA 986
Query 849 GATTATTTTTATGGATGAAAAAG 871
|||||||||||||||| ||||||
Sbjct 987 GATTATTTTTATGGATCAAAAAG 1009
Score = 176 bits (95), Expect = 5e-43
Identities = 110/117 (94%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 439 TATCTTCCAAGAGGTTTTACCACCTCAAGTGGTTTGAGTAAACTGTGCAATGAGATAATT 498
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 478 TATCTTCCAAGAGGTTTTACCACATCAAGTGGTTCGAGTAAACTGTGCAATGAGATAATT 537
Query 499 CTAATGGATGAAAAA-AGCAGGCCATCGACGCTAAAACTGTGTTACCATAAATCAAG 554
||||| ||||||||| | |||||||||||||||||||||| ||||| ||||||||||
Sbjct 538 CTAATAGATGAAAAAGA-CAGGCCATCGACGCTAAAACTGCGTTACAATAAATCAAG 593
Score = 75.0 bits (40), Expect = 2e-12
Identities = 50/55 (91%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1432 GCATCTTTCGACAACTCAGTTGGTCCAAGACGGAGTAGCATGGGACAAGAAGTGA 1486
||||||||||| |||| ||| | |||||||||||||||||||||||||||||||
Sbjct 1539 GCATCTTTCGATGACTCGGTTTGACCAAGACGGAGTAGCATGGGACAAGAAGTGA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5