BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355547
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35580.1 | Symbols: | Protein kinase superfamily protein | ... 1895 0.0
AT2G05940.1 | Symbols: | Protein kinase superfamily protein | ... 793 0.0
AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:1... 102 8e-21
> AT5G35580.1 | Symbols: | Protein kinase superfamily protein
| chr5:13761965-13763944 FORWARD LENGTH=1593
Length=1593
Score = 1895 bits (1026), Expect = 0.0
Identities = 1136/1191 (95%), Gaps = 0/1191 (0%)
Strand=Plus/Plus
Query 22 TCTTGGAGATCATTAATGGTTTTGTGTTTCCAAGATCCAGACAACATATATTCTCCCAAG 81
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTGGAGATCATTGATGGTTTTGTGTTTCCAAGATCCAGACAACATATATTCTCCCAAG 60
Query 82 AAGACAAAGAAAGATGATGGTCAAGGTGTGATAACCAAACAGAAATCGTTTCTCGGATTG 141
||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||||
Sbjct 61 AAGACAAAGAAAGATGATGGTGAACGTGTGATTACCAAACAGAAATCGTTTCTTGGATTG 120
Query 142 TCGATTCTAGACATAAGCAATCCAAGTTCCACTACCTTTTCGGAAGATCTCTCAATCTCT 201
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 121 TCGATTCTAGACATAAGTAATCCAAGTTCCACTACCTTGTCCGAAGATCTCTCAATCTCC 180
Query 202 CTCGCCGGCTCCGATCTCCATGTATTCACACAAGCAGAGCTTAAAGTCATAACACAAAGC 261
||||||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 181 CTCGCCGGCTCGGATCTCCACGTGTTCACACAAGCAGAGCTTAGAGTCATAACACAAAGC 240
Query 262 TTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGGCCGGTTCACAAAGGGTTTATT 321
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 241 TTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGTCCGGTTCATAAAGGGTTCATC 300
Query 322 GACGACAGGCTCCGTCCTGGTCTTAAGGCTCAGCCTGTCGCTGTTAAACTTCTCGATCTT 381
|| |||| ||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct 301 GATGACAAGCTCCGTCCTGGTCTTAAGGCTCAGCCCGTTGCCGTTAAACTTCTTGATCTT 360
Query 382 GATGGTCTTCAAGGTCACCGTGAGTGGATGACGGAGGTCATGTGTTTGGGAAAACTAAAG 441
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 361 GATGGTCTTCAAGGTCACCGTGAGTTTATGACGGAGGTTATGTGTTTGGGAAAACTAAAG 420
Query 442 CACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAGACTTCTTGTT 501
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 CATCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGCACATAGACTTCTTGTT 480
Query 502 TATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAGGTGTTCCCTACCG 561
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 481 TATGAGTTCATGCCTCGTGGAAGTTTGGAGTCTCAACTCTTCAGAAGGTGCTCCCTACCG 540
Query 562 CTGCCATGGACAACTAGGTTGAAGATCGCTTACGAAGCTGCCAAGGGTCTACAGTTTCTC 621
|||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 541 CTGCCATGGACAACGAGGTTGAACATCGCTTATGAAGCTGCAAAGGGTCTACAGTTTCTA 600
Query 622 CATGAAGCCGAGAAGCCTGTCATCTATCGCGATTTCAAGGCCTCCAATATCTTGTTAGAT 681
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 CATGAAGCCGAGAAGCCCATCATCTATCGCGATTTCAAGGCCTCTAATATCTTGTTAGAT 660
Query 682 TCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGAT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGAT 720
Query 742 GATACACATGTGTCCACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAGAGTACATA 801
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATACACATGTGTCGACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAGAGTACATA 780
Query 802 ATGACAGGTCATCTAACGGCTAAGAGTGATGTATACAGCTTTGGAGTGGTGTTGCTTGAG 861
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 ATGACAGGTCATTTAACGGCTAAGAGTGATGTGTACAGCTTTGGAGTGGTGTTGCTTGAG 840
Query 862 CTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCGTCAAGGAAAGAAACCCTCGTT 921
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 841 CTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCATCAAGAAAAGAAACCCTCGTT 900
Query 922 GAGTGGGCTCGTCCAATGCTCAACGACGTACGTAAACTCGGGAGAATAATGGACCCGAGG 981
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 901 GAGTGGGCTCGTCCAATGCTCAACGACGCACGTAAACTCGGGAGAATAATGGACCCGAGG 960
Query 982 CTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAACTCTAGCTTATCAATGC 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAACTCTAGCTTATCAATGC 1020
Query 1042 CTAAGGTACCGACCAAAGACCAGGCCAGACATCAGCACTGTTGTCTCAGTTCTCCAAGAC 1101
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1021 CTAAGGTACCGACCAAAGACAAGGCCAGACATTAGCACTGTTGTCTCCGTTCTCCAAGAC 1080
Query 1102 ATCAAAGATTACAAAGATGATATTCCCATTGGGGTATTCACTTACACGGTTCCTACTAAA 1161
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 1081 ATCAAAGATTACAAAGATGATATTCCCATTGGGATATTCACTTACACCGTTCCTACCAAG 1140
Query 1162 CCAAGCCGTGAAGTTAAAGTGACAAGTCTTCAAAACTTTGACAAGCCTCGC 1212
||| |||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1141 CCACGCCGGGAAGTTAAAGAGACAAGTCTTCAAAACTTTGACAAGCCACGC 1191
> AT2G05940.1 | Symbols: | Protein kinase superfamily protein
| chr2:2287238-2289307 REVERSE LENGTH=1702
Length=1702
Score = 793 bits (429), Expect = 0.0
Identities = 834/1027 (81%), Gaps = 37/1027 (4%)
Strand=Plus/Plus
Query 142 TCGATTCTAGACATAAGCAATCCAAGTTCC-ACTACCTTT-TCGGAAGATCTCTCAATCT 199
||||| || || || ||||||||||||||| || | |||| || |||||||| || || |
Sbjct 176 TCGATACTTGATATGAGCAATCCAAGTTCCAAC-A-CTTTGTCAGAAGATCTATCGATTT 233
Query 200 CTCTCGCCGGCTCCGATCTCCATGTATTCACACAAGCAGAGCTTAAAGTCATAACACAAA 259
|| | ||||| || ||||| ||||| || || | ||| |||||||||||||| |||||||
Sbjct 234 CTTTGGCCGGATCAGATCTTCATGTGTTTACCCTAGCGGAGCTTAAAGTCATTACACAAA 293
Query 260 GCTTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGGCCGGTTCACAAAGGGTTT- 318
|||| || || | ||| ||||| |||||||| |||||||| || ||||| ||||||||
Sbjct 294 GCTTTTCATCGACCAATTTTCTAGGTGAAGGTGGGTTTGGTCCTGTTCA-TAAGGGTTTC 352
Query 319 ATTGACGACAGGCTCCGTCCTGGTCTTAAGGCTCAGCCTGTCGCTGTTAAACTT-CTCGA 377
||||| || | ||| |||||||||||||| ||||||||||| ||||||||| || || ||
Sbjct 353 ATTGATGATAAGCTACGTCCTGGTCTTAAAGCTCAGCCTGTTGCTGTTAAA-TTGCTTGA 411
Query 378 TCTTGATGGTCTTCAAGGTCACCGTGAGTGGATGACGGAGGTCATGTGTTTGGGAAAACT 437
|||||| |||||||||||||||||||| ||| ||||||| || |||| ||||||| || |
Sbjct 412 TCTTGAAGGTCTTCAAGGTCACCGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAATT 471
Query 438 AAAGCACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAG-ACTTC 496
|||||| ||| ||||||| |||| || ||||| || |||||||||||||| || ||
Sbjct 472 GAAGCACAAAAATTTGGTGAAATTGATTGGTTATTGTTGTGAGGAAGAACATAGAAC-TC 530
Query 497 TTGTTTATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAGGTGTTC-- 554
|||||||||||||||||||||||||||| |||||| |||||| |||||||| | ||
Sbjct 531 TTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCAACTTTTCAGAAGATACTCTG 590
Query 555 CCTACCGCTGCCATGGACAACTAGGTTGAAGATCGCTTACGAAGCTGCCA-AGGGTCTAC 613
||| | ||| |||||| |||| || ||||||||||| | | |||||| | ||| || |
Sbjct 591 CCT-C-GCTTCCATGGTCAACAAGAATGAAGATCGCTCATGGAGCTGCAACAGGA-CTTC 647
Query 614 AGTTTCTCCATGAAGCCGAGAAGCCTGTCATCTATCGCGATTTCAAGGCCTCCAATATCT 673
| ||||| || ||||| || || ||||| |||||||| |||||||| |||||||||||||
Sbjct 648 AATTTCTACACGAAGCTGAAAATCCTGTTATCTATCGGGATTTCAAAGCCTCCAATATCT 707
Query 674 TGTTAGATTCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCAC 733
|||||||||| ||||| || ||||||||||| ||||||||| |||| ||||||||||||
Sbjct 708 TGTTAGATTCCGATTACACGGCGAAACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAG 767
Query 734 AAGGCGATGATACACATGTGTCCACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAG 793
|||| || || || |||||||| ||||| ||||||||||||||||| ||||| || || |
Sbjct 768 AAGGAGACGACACTCATGTGTCAACTCGAGTGATGGGCACACAAGGCTACGCAGCTCCTG 827
Query 794 AGTACATAATGACAGGTCATCTAACGGCTAAGA-GTGATGTATACAGCTTTGGAGTGGTG 852
| ||||| ||||| |||||| |||| || |||| |||| ||||||||||||||||| |||
Sbjct 828 AATACATCATGACCGGTCATTTAACAGC-AAGAAGTGACGTATACAGCTTTGGAGTTGTG 886
Query 853 TTGCTTGAGCTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCGTCAAGGAAAGAA 912
||||| ||||| ||||| || |||| ||| || |||| | |||||| || ||| || ||
Sbjct 887 TTGCTAGAGCTTTTGACCGGACGGAGATCAGTAGACAAAAAGAGATCATCGAGGGAACAA 946
Query 913 ACCCTCGTTGAGTGGGCTCGTCCAATGCTCAACGACGTACGTAAACTCGGGAGAATAATG 972
| ||| || || |||||||||||||||||||| ||| ||||||||| |||| |||
Sbjct 947 AACCTTGTGGACTGGGCTCGTCCAATGCTCAATGACCCACGTAAACTATCTCGAATCATG 1006
Query 973 GACCCGAGGCTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAAC-TCTAGC 1031
|||||||| ||||||| ||||||||||||||| |||||| |||| |||||||| | | ||
Sbjct 1007 GACCCGAGACTTGAAGGTCAGTACTCAGAGACAGGAGCAAGAAAAGCAGCAACAT-TGGC 1065
Query 1032 TTATCAATGCCTAAGGTACCGACCAAAGA-CCAGGCCA-GACATCAGCACTGTTGTCTC- 1088
||| |||||| |||| | ||||| |||| || ||||| | || || | || |||||
Sbjct 1066 TTACCAATGCTTAAGCCATCGACCCAAGAACC-GGCCATGT-ATGAGTGCCGTCGTCTCT 1123
Query 1089 AGTTCTCCAA-GA-CATCAAAGATTACAAAGATGATATTCCCATTGGGGTA-TT-CACTT 1144
| | ||| || || | | ||||| || || ||||||||| || |||| | || |||||
Sbjct 1124 A-TACTC-AATGATCTT-AAAGACTATAA---TGATATTCCTAT-GGGG-ACTTTCACTT 1175
Query 1145 ACACGGT 1151
|||||||
Sbjct 1176 ACACGGT 1182
> AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:12424775-12426674
FORWARD LENGTH=1563
Length=1563
Score = 102 bits (55), Expect = 8e-21
Identities = 229/309 (74%), Gaps = 28/309 (9%)
Strand=Plus/Plus
Query 441 GCACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAGACTTCTTGT 500
||| || ||||| ||||| ||||| || ||||||| ||||| || ||| | ||||||||
Sbjct 608 GCATCCTAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGATGAGCATCGTCTTCTTGT 667
Query 501 TTATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAG-GTGTTCCC-T- 557
|||||||||||||||||||||||| |||||| ||| | |||||||| | |||| |
Sbjct 668 TTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCATTTGTTCAGAAGAG-GTTCTTATT 726
Query 558 ---A-CCGCTGCCATGGACAACTA-GGTTGAA-GAT-CGCTTACGAAGCTGCCAAGGGTC 610
| || | | ||||| || ||||||| | | | ||| | || || || ||||
Sbjct 727 TTCAACCTTTATCTTGGACT-CTCCGGTTGAAAGTTGCTCTTG-GT-GCAGCGAAAGGTC 783
Query 611 TA-CAGTTTCTCCATGAA-GCCGAGA--AGCCTGTCATCTATCGCGATTTCAAGGCCTCC 666
| | |||||| ||| || ||||||| || |||||| || ||||||||||| | ||
Sbjct 784 TTGC-GTTTCTTCAT-AACGCCGAGACTAG--TGTCATATACCGCGATTTCAAAACGTCG 839
Query 667 AATAT-CTTG-TTAGATTCTGATTATACA-GCGAAACTCTCGGACTTCGGGCTAGCAAAA 723
||||| || | || ||||| || || | | || || || || || ||||||||||| |||
Sbjct 840 AATATACT-GCTT-GATTCGGAGTACA-ATGCTAAGCTTTCTGATTTCGGGCTAGCTAAA 896
Query 724 GACGGACCA 732
||||| |||
Sbjct 897 GACGGTCCA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5