BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355577
Length=2604
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 3849 0.0
> AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr5:14029686-14035493
REVERSE LENGTH=2886
Length=2886
Score = 3849 bits (2084), Expect = 0.0
Identities = 2447/2620 (93%), Gaps = 33/2620 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGATGGTACCATGGACGTCGACGAATCACCGGTTTCGTGGAAGGTAAAGTCCCTG 60
||||| || |||| ||||||||||||||||||||| || || |||||||||||||| |||
Sbjct 89 ATGAGCGACGGTAACATGGACGTCGACGAATCACCAGTCTCTTGGAAGGTAAAGTCTCTG 148
Query 61 GA-AACATTAGTCGATGG---TTCTTTCTCTTCGACACTCTCGAAACTCTCATCGTCTTC 116
|| || |||| ||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 149 GAGAA-ATTAATCGATGGTTCTTCTTTCTCTTCGACTCTCTCGAGACTCTCATCGTCTTC 207
Query 117 TCGTCTGATTCCGTCGAGTAGAGATTTTCATTTTTACTACAATTTCGATGAGTTTAAACG 176
||| || ||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 208 TCGCCTAATTCCAACGAGTAGAGATTTTCACTTTTACTACAATTTCGATGAGTTCAAACG 267
Query 177 CCCAATCGATGATATAGCTGGAAGCTCGCAATCAGTTCTCG-AGACGATCGGTGATTCCG 235
|||||||||||| ||| |||||| |||||||||| ||| | | ||||||||||||||||
Sbjct 268 CCCAATCGATGAGATAACTGGAACCTCGCAATCAACTCTTGCA-ACGATCGGTGATTCCG 326
Query 236 AGCAAGTTTGGGGGAAATCGATGAAGTTTCCTGGCGATGTTGATGAAGT-TGATGCTGAG 294
|||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||
Sbjct 327 AGCAAGTTTGGGGGAAATCGATGAAGTTTCCTGGCGATGTTGATGACGTAT-ATGCGGAG 385
Query 295 GATTGGCTT-TGTAACGTGAATGATGAATTTATCGAGAGATTTGATGTTTCTGTTGATGA 353
|||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 386 GATTGG-TTATGTAACGTGAATGATGAATTGATTGAGAGATTTGATGTTTCTGTTGATGA 444
Query 354 GTTTCAGAGGATCCGGAAGAAAGAAGAA-GAAATTGGTCGGCCTG-TG--GATTATAATG 409
|||||||||||| ||||||||| |||| ||||||||| || ||| || | | || |||
Sbjct 445 GTTTCAGAGGATTAGGAAGAAAG-AGAAGGAAATTGGTAGGTCTGTTGTTGCTGATGATG 503
Query 410 GGGATGATGGGTTTCAGATGGTTTATGGGAAGAAGAAAAAGCCTGTCGGTAATGTGATTA 469
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 504 GAGATGATGGGTTTCAGATGGTTTATGGGAAGAAGAAGAAGCCTGTTGGTAATGTGGTTA 563
Query 470 CTGGCT-TG--GCGGCTAA---TGGTGGTTCGGTGATTGATGTTAAGATGGCTGAGAGGG 523
|||||| | |||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 564 CTGGCTCGGCAGCGGTTAATGGTGGTGGTTCTGTGATTGATGTTAAGATGGCTGAGAGGG 623
Query 524 ATAAGAATTCATCTGGTAAGGCCAAAGTTCCTTTCCATGTACCAACCATAAAGAAGCCTC 583
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 624 ATAAGAATTCATCTGGTAAGGCTAAAGTTCCTTTTCATGTACCAACTATAAAGAAGCCTC 683
Query 584 AAGAGGAGTATAACATACTGGTGAACAACGCTAATCAACCGTTTGAGCATGTTTGGTTGG 643
||||||||||||||||| |||||||||| || |||| |||||||||||||||||||||||
Sbjct 684 AAGAGGAGTATAACATATTGGTGAACAATGCGAATCTACCGTTTGAGCATGTTTGGTTGG 743
Query 644 AGAGGAGCGAGGACGATCAGCGGGTC-ATGCATCCACTGGAGAAACTTTCAGTGCTTGAC 702
||||||||||||| |||| ||||| | |||||||| |||||||| ||||||||||||||
Sbjct 744 AGAGGAGCGAGGATGATCTGCGGG-CTATGCATCCTTTGGAGAAATTTTCAGTGCTTGAC 802
Query 703 TTCGTTGACAAAGATTTAAACGAGATGGAACCTGTTAAGCCCCAACCACTTGAAGAGACT 762
||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||| |||||
Sbjct 803 TTCGTTGACAAAGATGTAAACGAGATGGAACCTGTGAAGCCCCTTCCACTGGAACAGACT 862
Query 763 CCATTCAAGTTTGTTCAGGAAGTGAAAGATCTAAAAGAATTAGTTGCTAAACTGCGTGGT 822
||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 863 CCATTCAAGTTCGTCCAGGAAGTGAAAGATCTGAAAGAATTAGTTGCCAAACTGCGTAGT 922
Query 823 GTTGAAGAGTTTGCGGTTGATCTGGAGCATAATCAGTATCGATCTTTTCAAGGATTGACA 882
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 923 GTTGAAGAGTTTGCGGTTGATCTGGAGCATAATCAGTATAGATCTTTTCAAGGATTGACA 982
Query 883 TGCTTGATGCAAATTTCCACCAGAACAGAGGATTATATAGTTGATACATTTAAGCTTCGT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TGCTTGATGCAAATTTCCACCAGAACAGAGGATTATATAGTTGATACATTTAAGCTTCGT 1042
Query 943 ATTCACATTGGTCCTTATCTAAGGGAGATATTCAAAGACCCTAAAAAGAAAAAGATAATG 1002
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1043 ATTCACATTGGGCCTTATCTAAGGGAGATATTCAAAGACCCTAAAAAGAAAAAGGTAATG 1102
Query 1003 CATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTTGGCATATATGTCTGCAAT 1062
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1103 CATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAAT 1162
Query 1063 CTCTTTGACACAGGACAGGCCTCTAGGGTGCTAAATTTGGAGAGAAATAGCCTGGAGTTT 1122
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1163 CTCTTTGACACAGGACAGGCCTCCAGGGTTCTAAATTTGGAGAGAAATAGCCTGGAGTTT 1222
Query 1123 CTTTTGCAGCATTTTTGCGGAGTTACTGCAAATAAAGAATACCAAAATGCAGACTGGAGA 1182
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1223 CTTTTGCAGCATTTTTGTGGAGTGACTGCAAATAAAGAGTACCAAAATGCAGACTGGAGA 1282
Query 1183 ATTCGACCCCTTCCAGAGGAAATGACAAGATATGCAAGAGAAGATACCCACTATCTTTTA 1242
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1283 ATAAGACCCCTTCCAGAGGAAATGACAAGATATGCAAGAGAAGATACCCACTACCTCTTA 1342
Query 1243 TACATATATGATGTAATGAGACTAGAACTTG-A-ACGAATGGCAAAGGATGACGAGCATA 1300
|||||||||||| |||| | |||||||| || | | |||||||||||||||||| |||||
Sbjct 1343 TACATATATGATTTAATCAAACTAGAAC-TGCAGA-GAATGGCAAAGGATGACGCGCATA 1400
Query 1301 CTGACTCTCCTCTGCTTGAGGTCTACAAGCGGAGTTACGATGTGTGCACACAACTATATG 1360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 CTGACTCTCCTCTACTTGAGGTCTACAAGCGGAGTTACGATGTGTGCACACAACTATATG 1460
Query 1361 AGAAAGAGCTATTGACCGAGATTTCATATCTTCACGTATATGGGCTTCAAGCAGCGGGCT 1420
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1461 AGAAAGAGTTATTGACCGAGAATTCATATCTTCACGTATATGGGCTTCAAGCAGCGGGCT 1520
Query 1421 TTAATGCAGCTCAACTTGCCATTGTTGCGGGGCTTTGCGAATGGAGGGATTTCATTGCAC 1480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1521 TTAATGCAGCTCAACTTGCCATTGTTGCGGGGCTTTGTGAATGGAGGGATTTCATTGCAC 1580
Query 1481 GTGCAGAGGATGAGAGCACTGGTTATGTATTGCCAAACAAAGTTCTCCTTGAAATAGCCA 1540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 GTGCGGAGGATGAGAGCACTGGTTATGTATTGCCAAACAAAGTTCTCCTTGAAATAGCCA 1640
Query 1541 AGGAGATGCCTGTTAGTGTTGGCAAATTGCGTCGGATGTTGAAGTCAAAGCATCCTTATA 1600
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1641 AGGAGATGCCTGATAGTGTTGGAAAATTGCGTCGGATGTTGAAGTCAAAGCATCCTTATA 1700
Query 1601 TCGAGCGTAATGTTGATTCGGTGGTCAGTGTCATCAGGCAATCAATGCAAAATTCTGCAG 1660
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1701 TCGAGCGTAATGTTGATTCGGTGGTCAGTGTCATCAGGCAATCAATGCAACATTATGCAG 1760
Query 1661 CATTTGAGTCTGCCGCTTTATCTTTAAAAGATGTGTCTCCTGGAACTGTAATGGATAAGA 1720
||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1761 CATTTGAGTCTGCTGCTCTATCTTTAAAAGATGTGTCTCCTGGAAATGTAATGGATAAGA 1820
Query 1721 ATATTGAACATATTAGTGAGAAGAAAGATATGCACGCAGTAGATGTAGCTTCTCCAAGTT 1780
||||||||| ||| |||||||||||||| ||||| ||| |||||| ||||||||||||
Sbjct 1821 ATATTGAACCTATAAGTGAGAAGAAAGACCTGCACACAGGAGATGTGGCTTCTCCAAGTC 1880
Query 1781 TGAAGGAAAATTCTTCGCAGCTTGAGAGTACCAGGGACCTAAATATGGATGCAGCAAATA 1840
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1881 TGAAGGAAAATTCTTCGCAGCTTGAGAGTACCAGGGACCTAATTATGGGTGCAGCAAATA 1940
Query 1841 CTAATGAAGGGAGAGGTTTAGGCA-CTGGCTTGTTTGGTTCTGCTAAGGTTTCTGCGGCT 1899
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1941 CTAATGAAGGGAGAGGTTTAGG-ATCCGGCTTGTTTGGTTCTGCTAAGGTTTCTGCGGCT 1999
Query 1900 GTTAGGATTTCTAAGAAACCGAGCAGTGGTTTAGGAGCATTGCTGGGAAGTGCAGCCTCG 1959
||| |||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 2000 GTTCGGATCTCTAAGAAACCAAGCAGTGGTTTAGGAGCTTTGCTGGGAAATGCAGCCTCC 2059
Query 1960 AAGAAGAAATCTCGAACTGATGAGAAGGTGAAGGAAGATGTGAAGCTCGAACAGATAAGA 2019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2060 AAGAAGAAATCTCGAACTGATGAGAAGGTGAAGGAAGATGTGAAGCTCGAACAGATAAGA 2119
Query 2020 TCATCTGTAAACCTGTCATTCCATTCGTTTACAGAGAAAGTTCCTGACTCAAAGTCAACT 2079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2120 TCATCTGTAAACCTGTCATTCCATTCGTTTACAGAGAAAGTTCCTGACTCAAAGTCAACT 2179
Query 2080 ACTGGAACAACTCCGAAGGTTTATGGGAAGCCTGAAGAGATGTCCACTACTATGCAAGCC 2139
||| |||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2180 TCTGAAACATCTCCGAAAGTTTATGGGAAGCCTGAAGAGATGTCCAGTACTATGCCAGCC 2239
Query 2140 TCTGTTTCCAAGGAAGATGGTGTGACAGAGTTGAAAGATGATTCAGAAGAAGCCTCAGAG 2199
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2240 TCTGTTTCCAAGGAAGATGGTGTGAAAGAGTTGAAAGATGATTCAGAAGAAGCCTCAGAG 2299
Query 2200 ATTGTTGGTACTTCTGGTAGAGTTTCAGAGTCCAAAGTATCTGGATCCGAGACAGGCGAT 2259
|| ||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||
Sbjct 2300 ATCGTTGGTACTTCTGGTAGAGTTTCAGAGTCCAAAGTGTCTAGCTCCGAGATGGGCGAT 2359
Query 2260 ATTATACTATTAGAAAATGGTGATGAGAAAGAAGTTGAGGCTGAAGATGAACCAATGTCT 2319
||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2360 ATTATACTACTAGAAAATGGTGATGAGAAAAAAGTTGACGCTGAAGATGAACCAATGTCT 2419
Query 2320 CTCTCTGAGTTGTCCACAAACTTTCAGAAGTGCTTTAAGTCCATGAAAAAGAGCAACAAG 2379
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 2420 CTCTCGGAGTTGTCCACAAACTTTCAGAAGTGCTTTAAATCCATGAATAAGAGCAAGAAG 2479
Query 2380 GCCCAAAAGCAGACCGATTTTTTAAACATAGAGCCGTTTGATTATGAAGCTGCAAGGAAA 2439
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2480 GCCCAAAAGCAGACCGAGTTTTTAAACATAGAGCCTTTTGATTATGAAGCTGCAAGGAAA 2539
Query 2440 GAGGTGAAATTTggggaaggacacaagggaagacaaggaaagaaagaagttgcagcaggt 2499
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2540 GAGGTGAAATTTGGGGAAGGACACAAGGGAAGACAAGGAAAGAGAGAAGCTGCAGCAGGT 2599
Query 2500 cagaagaagaaggggTCTGGACCGGAGCAGTCAGAGTTTGGTCAAGGAAAACGGCGTCAA 2559
||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2600 CAGAAGAAG--GGG-TCTACACAGGAGCAGTCAGAGTTTGGTCAAGGAAAACGGCGTCAA 2656
Query 2560 GCTTTTCCGGCATCTGGGAACCGAAGTGCGACCTTTAAAA 2599
|||||||||||||| |||||||||||| | |||||||||
Sbjct 2657 GCTTTTCCGGCATCCGGGAACCGAAGTATGTCCTTTAAAA 2696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129280212111
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5