BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355584
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35960.1 | Symbols: | Protein kinase family protein | chr5:... 1768 0.0
AT5G18910.1 | Symbols: | Protein kinase superfamily protein | ... 209 4e-53
> AT5G35960.1 | Symbols: | Protein kinase family protein | chr5:14108524-14110536
REVERSE LENGTH=1290
Length=1290
Score = 1768 bits (957), Expect = 0.0
Identities = 1133/1219 (93%), Gaps = 8/1219 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGCTCCAGATTCTTCTTCGCCGACTGGAGTTCTCGAAGAGTTCTTCAGAACCGAA 60
||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 76 ATGAAAGTTCCAGATTCTTCTTCACCGACCGGAGTTCTCGAAGAATTCTTCAGAACCGAA 135
Query 61 GAATTCGGTAG---CTCGGAGACGGTAAAGGAGTATCCTTCCTCTTCTCGTTTCCGCAAG 117
|||||| ||| ||| |||||||| || || | ||||||||||||||||||||||||
Sbjct 136 GAATTCAATAGCTCCTCCGAGACGGTCAA-GA--ACCCTTCCTCTTCTCGTTTCCGCAAG 192
Query 118 ATTGTTCAGCTTCTGAGAAGCAGATCCAAAAAGTCTATAGAGAATCTCAAGATTCCTTTT 177
|| ||||||||||| ||||||| ||||||||||||| | |||||| |||||||||| |||
Sbjct 193 ATGGTTCAGCTTCTCAGAAGCAAATCCAAAAAGTCTCTTGAGAATGTCAAGATTCCGTTT 252
Query 178 CACAACAACGGTGTTATTCAGAGTTCTTTGAGAAGATGTAGTAGCATGAGAGATAACCTC 237
|||||||| ||||||||| |||||||||| |||||||| |||||||||||||| || |||
Sbjct 253 CACAACAATGGTGTTATTAAGAGTTCTTTTAGAAGATGCAGTAGCATGAGAGAAAATCTC 312
Query 238 AGATTTGGCTCCAGTGATGCACAGTTTCTTTTACTTTCTCCCAGAAGAATCTTCACCTTC 297
|||||| |||||| |||| | || |||||| ||| |||||| ||||||||||||||||||
Sbjct 313 AGATTTAGCTCCAATGATTCTCACTTTCTTCTACATTCTCCTAGAAGAATCTTCACCTTC 372
Query 298 TCTGACCTCAAAACTGCTACAAACAATTTCGCTTTAGAGAATCTAATTGGGAAAGGAGGT 357
||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 373 TCTGACCTCAAGTCTGCTACAAACAATTTCTCTTTAGAAAATCTAATTGGGAAAGGAGGT 432
Query 358 TATGCTGAAGTTTACAAGGGGATGTTGCCAAATGGACAAATGGTTGCGATAAAACGGCTG 417
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||
Sbjct 433 TATGCTGAAGTTTACAAAGGGATGTTACCAAATGGACAAATGGTAGCGATAAAACGGTTG 492
Query 418 ATGCGGGGAAATAGCGAAGAGATCATTGTAGATTTTCTTTCAGAGATGGGTATAATGGCA 477
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 493 ATGCGGGGAAATAGTGAAGAGATCATTGTAGACTTTCTTTCGGAGATGGGTATAATGGCA 552
Query 478 CATGTCAACCATCCAAACATAGCTAAGCTTTTAGGCTATGGGGTTGAAGGAGGAATGCAT 537
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 553 CATGTTAACCATCCCAACATAGCTAAGCTTTTAGGCTATGGAGTTGAAGGAGGAATGCAT 612
Query 538 CTTGTTCTTGAGTTATCACCTCATGGCAGCTTAGCTTCTATGCTTTATAACTCCAAGGAG 597
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 613 CTTGTTCTTGAGTTATCACCTCATGGCAGCTTAGCTTCTATGCTCTATAGCTCCAAGGAG 672
Query 598 AAGATGAAATGGAGTATCAGGTACAAGATAGCATTGGGAGTTGCGGAGGGTCTGGTTTAT 657
|||||||||||||| || ||||||||||||||||| ||||||||||||||||| || |||
Sbjct 673 AAGATGAAATGGAGCATTAGGTACAAGATAGCATTAGGAGTTGCGGAGGGTCTAGTGTAT 732
Query 658 CTACACAGAGGATGTCACAGGAGAATTATACATAGAGATATCAAAGCCGCAAACATTCTT 717
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CTTCATAGAGGATGTCATAGGAGAATTATACATAGAGATATCAAAGCCGCAAACATTCTT 792
Query 718 CTCACACATGATTTTTCGCCTCAGATATGTGACTTTGGACTCT-CGAAGTGGTTACCTGA 776
||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||
Sbjct 793 CTCACACATGATTTTTCTCCTCAGATATGTGACTTTGGGCT-TGCGAAGTGGTTACCTGA 851
Query 777 AAATTGGACACACCATATTGTTTCCAAGTTCGAGGGCACATTCGGATATCTTGCTCCAGA 836
||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 852 AAATTGGACACACCACATTGTTTCCAAATTTGAGGGCACATTCGGGTATCTTGCTCCAGA 911
Query 837 GTACTTAACACATGGGATAGTAGATGAAAAGACCGATGTATTCGCCTTGGGTGTACTTTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GTACTTAACACATGGGATAGTAGATGAAAAGACCGATGTATTCGCCTTGGGTGTACTTTT 971
Query 897 ACTAGAACTTGTTACTGGAAGACGAGCTCTCGATTACTCCAAGCAAAGTCTTGTTCTATG 956
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 972 ACTGGAACTTGTTACCGGACGACGAGCTCTCGATTACTCCAAGCAAAGTCTTGTTCTATG 1031
Query 957 GGCTAAACCATTGATGAAGAAGAACAAAATAAGAGAGCTAATCGATCCATCTCTGTCGGG 1016
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1032 GGCTAAACCATTGATGAAGAAGAACAAAATTAGAGAGCTAATCGATCCATCTCTGGCGGG 1091
Query 1017 TGAGTACGAGTGGAGGCAGATAAAAAGTGTGCTTTTGGCTGCTGCGTTATCAATCCAACA 1076
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1092 TGAGTACGAATGGAGGCAGATAAAACTTGTGCTTTTGGCTGCTGCGTTATCAATCCAACA 1151
Query 1077 GTCATCAATAGAGAGGCCTGAAATGAGTCAGGTTGTTGAAATCCTCAAAGGCAACTTGAA 1136
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1152 ATCATCGATAGAGAGGCCTGAAATGAGTCAGGTTGTTGAGATCCTCAAAGGCAACTTGAA 1211
Query 1137 AGATCTCAAGTGCATCATGAAATGCAGAGTTCCTTTTTATCGAAAAGCATTCAGAGATGA 1196
||||||||||||||||||||||||||||||||| |||||| | ||||| ||||| |||||
Sbjct 1212 AGATCTCAAGTGCATCATGAAATGCAGAGTTCCCTTTTATAGGAAAGCTTTCAGGGATGA 1271
Query 1197 AGTTGGCAAGAGAGATTAG 1215
||||||||| | |||||||
Sbjct 1272 AGTTGGCAAAAAAGATTAG 1290
> AT5G18910.1 | Symbols: | Protein kinase superfamily protein
| chr5:6306828-6309419 REVERSE LENGTH=1725
Length=1725
Score = 209 bits (113), Expect = 4e-53
Identities = 390/518 (75%), Gaps = 42/518 (8%)
Strand=Plus/Plus
Query 487 CATCCAAACATAGCTAAGCTT-TTAGGCTATGGGGTTGAAGGAGGAATGCATCTTGTTCT 545
||||||||||| ||||||||| || || ||| | ||||||||||||||||||||||||||
Sbjct 759 CATCCAAACATTGCTAAGCTTATT-GGTTATTGTGTTGAAGGAGGAATGCATCTTGTTCT 817
Query 546 TGAGTTATCACCTCATGGCAGC-TTAGCTTCTATGCTTTATAACTCCAAGGAGAAGA-TG 603
|||| |||| ||| |||| ||| || |||||| |||| || | | |||||||| | ||
Sbjct 818 TGAGCTATCTCCTAATGGAAGCCTT-GCTTCTTTGCTCTACGAGGCGAAGGAGAA-ACTG 875
Query 604 AAATGGAGTATCAGGTACAA-GATAGC-ATTGGGAGTTGCGGAGGGTCTGGTT-TATCTA 660
|| ||||| || || ||||| | | || || |||| || ||||| || | |||||
Sbjct 876 AATTGGAGCATGAGATACAAAG-TGGCGAT-GGGAACAGCAGAGGGACTC-TACTATCTC 932
Query 661 CACAGA-GGATGTCACAGGAGAATTATACATAGAGATATCAAAGCCGCAAACATTCTTCT 719
|| || || ||||| || ||||| || |||| ||| || ||||| | |||||||||||
Sbjct 933 CAT-GAAGGTTGTCAGAGAAGAATCATTCATAAAGACATTAAAGCTTCTAACATTCTTCT 991
Query 720 CACACATGATTTTTC-GCCTCAGATAT-GTGACTTT-GGACTCTCGAAGTGGTTACCTGA 776
||| || || ||| | ||||||||| | || ||| || || |||| ||| |||| ||
Sbjct 992 CACTCA-GAACTTTGAGGCTCAGATATCG-GA-TTTCGGGCTAGCGAAATGGCTACCAGA 1048
Query 777 A-AATTGGACACACCATATTGTTTCCAA-GTTCGAGGGCACATTCGGATATCTTGCTCCA 834
||| |||| ||||||| ||| || || ||| || || |||||||| || ||| | |||
Sbjct 1049 CCAAT-GGACTCACCATACTGTATCAAAAGTT-GAAGGAACATTCGGTTACCTTCCGCCA 1106
Query 835 GAGTACTTAACACATGGGATAGTAGATGA-AAAGACCGATGTAT-TCGCCT-TGGGTGTA 891
|||| || | |||||||||||||| || ||| || || |||| | || | ||| |||
Sbjct 1107 GAGTTTTTCATGCATGGGATAGTAGACGAGAAA-ACAGACGTATAT-GCTTATGG-TGTC 1163
Query 892 CTT-TTACTAGAACTTGTTACTGGAAGACGAGCTCTCGATTA-CTC-CAAGCAAAGTC-T 947
|| || || || || |||| || |||| ||| ||||| | ||| ||| || || | |
Sbjct 1164 CTGCTT-CTCGAGCTCATTACCGGTAGACAAGCCCTCGAC-AGCTCACAA-CATAG-CAT 1219
Query 948 TGTTC-TATGGGCTAAACCATTGATGAA-GAAGAACAA 983
||| | | |||||||| |||||||| || || ||||||
Sbjct 1220 TGT-CATGTGGGCTAAGCCATTGATCAAAGA-GAACAA 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5