BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355629

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14780.1 | Symbols:  | MAC/Perforin domain-containing protei...   758    0.0  


> AT1G14780.1 | Symbols:  | MAC/Perforin domain-containing protein 
| chr1:5090990-5094152 FORWARD LENGTH=2193
Length=2193

 Score =  758 bits (410),  Expect = 0.0
 Identities = 478/512 (93%), Gaps = 0/512 (0%)
 Strand=Plus/Plus

Query  1     ATGGCTTCGGCATATCCAGCTCTTCACATCAACTTCATAGGTCCCAAACTATACGTTAAT  60
             ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1114  ATGGCTTCGGCCTATCCAGCTCTTCACATCAACTTCATGGGTCCCAAACTATACGTTAAT  1173

Query  61    ACCACTCCCGTGACTAGCGAGAAGAATCCAGTAACCGGAATGCGATTGTTCCTTGAAGGC  120
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1174  ACCACTCCCGTGACTAGCGAGAAGAATCCAGTAACCGGAATGCGATTTTTCCTTGAAGGC  1233

Query  121   AAGAAATGTAATAGGCTTGCTATACACTTACAACACCTAGAAAATACAAGAACTACAGTT  180
             |||||||| |||||||| ||||||||| ||||||||||||| || ||||||||||| |||
Sbjct  1234  AAGAAATGCAATAGGCTGGCTATACACCTACAACACCTAGACAACACAAGAACTACGGTT  1293

Query  181   GGGGAAAAGATCACCGACGAACATATATGGAGAGGCTCCGATCAAATCACCGACAATGAT  240
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1294  GGGGAAAAGATCACTGACGAACATATATGGAGAGGCTCCGATCAAATCACCGACAATGAT  1353

Query  241   CGCTATTTCGAAACTTTAAACGGTAAGAAATTCTCACACATGTGTACGGCTCCAGTGAAG  300
             ||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct  1354  CGCTACTTCGAACCTTTAAACGGTAAGAAATTCTCACACGTGTGTACGGTTCCAGTGAAG  1413

Query  301   TATGACCCAAACTGGATCACAACAAGAAGCAATCACAAGTCCCAAAACGACGTCGCTGTC  360
             || |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||
Sbjct  1414  TACGACCCAAACTGGATCAAAACAACAAGCAATCACAAGTCCCAAAACGACGTAGCTTTC  1473

Query  361   ATCGTCACCAGAGCACAACTCGAAGTGAAGAAACATGGCTCAAAATCTGTTCTCCATCTC  420
             ||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct  1474  ATCGTCACCGGAGCACAACTCGAAGTGAAAAAACACGGCTCAAAATCCGTTCTCCATCTC  1533

Query  421   CGTCTTCGTTTCACTAAAGTCTCTGACCACTACATCGTACAGAACAATTGGGTTCATGGA  480
             || || |||| ||||||||||||||| || ||| |||| ||||| | |||||||||||||
Sbjct  1534  CGACTCCGTTACACTAAAGTCTCTGATCATTACGTCGTTCAGAATAGTTGGGTTCATGGA  1593

Query  481   CCAACCGGGACTTCTCAGAAATCGGGAATCTT  512
             ||||  ||||||||||||||||||||||||||
Sbjct  1594  CCAATTGGGACTTCTCAGAAATCGGGAATCTT  1625



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30843766258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5