BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355720

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   180    1e-44


> AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G30520.1); 
Has 249 Blast hits to 117 proteins in 25 species: 
Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 5; Plants 
- 112; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). 
| chr3:13451438-13452807 REVERSE LENGTH=993
Length=993

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 161/192 (84%), Gaps = 3/192 (2%)
 Strand=Plus/Minus

Query  145  ATTGTGGGGCATTTGAAGGTGAATTCTATTGAGGAGCAGTTGGAGGTGTTCCCCATTGTG  204
            |||| || ||| ||| ||||||| || |||| ||||||||||||| ||  | ||||||  
Sbjct  991  ATTGCGGAGCAGTTGGAGGTGAACTCAATTGCGGAGCAGTTGGAGATGAACTCCATTG-C  933

Query  205  GAGCATTTGAAGGAGGTGGACCCCATTGTGGTGCAATTGGAGGTATTCCCCATTGTGGGA  264
            | ||| |   || ||||| |||||||||||||| | |||| || |||  ||||||||| |
Sbjct  932  G-GCA-TACTAGAAGGTGTACCCCATTGTGGTGTAGTTGGTGGAATTGTCCATTGTGGAA  875

Query  265  CATTTGAAGGTGAATTCCATTGCGGAGCAGTTGGAGGTGTTTCCCATTGTTGAATACCAG  324
            ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| 
Sbjct  874  CATTTGAAGGTGAATTCCATTGCGGAGCAGTAGGAGGTGTTCCCCATTGTTGAAAACCAT  815

Query  325  GACCCCATTGAC  336
            ||||||||||||
Sbjct  814  GACCCCATTGAC  803



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5