BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355724
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32980.1 | Symbols: | unknown protein; Has 158 Blast hits t... 1074 0.0
> AT2G32980.1 | Symbols: | unknown protein; Has 158 Blast hits
to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa
- 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes
- 14 (source: NCBI BLink). | chr2:13997382-13999828 REVERSE
LENGTH=1191
Length=1191
Score = 1074 bits (581), Expect = 0.0
Identities = 641/670 (96%), Gaps = 4/670 (1%)
Strand=Plus/Plus
Query 158 AGGATGATAAAAATGTGGCGCATTTGACTCATG-TGAGTGAAATGCAAAAGAAAATCGAG 216
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 361 AGGATGATAAAAATGTGGCGCATTTGACTCATGTTG-GTGAAATGCAAAAGAAAATCGAG 419
Query 217 ACTTTGTCAATGATAACTCAGATATTGAAAGATGTTATACAAAACAAGGATCGCATCATT 276
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACTTTGTCAAGGATTACTCAAATATTGAAAGATGTTATACAAAACAAGGATCGCATCATT 479
Query 277 GCTCGTCTCCAACAACCTTATTCGCTAGATTGCATTCCAGTTGAAGCAGAATATCAGAAA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTCGTCTCCAACAACCTTATTCGCTAGATTGCATTCCAGTTGAAGCAGAATATCAGAAA 539
Query 337 CAATTCTCAGAGTTGCTAATGAAAGCCGCCAGTGATTATGGCGCCTTAACAACATTAGTG 396
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 540 CAATTCTCAGAGTTGCTAATGAAAGCCGCCAGTGATTATGGCGCCTTAACAGCATCCGTG 599
Query 397 TCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTCCTTCAGTCTGGGGGGAAATGCTG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTCCTTCAGTCTGGGGGGAAATGCTG 659
Query 457 CGCCCAATACCGGTGGCGCTAGCTTCATGTACGAGATTCTTTGAGGCCATGTCTGCGATG 516
|| |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 660 CGTCCAATACCTGTGGCACTAGCGTCATGCACGAGATTCTTTGAGGCCATGTCTGCGATG 719
Query 517 AGAGAATCGTTCGCGACTCTTCAAGAACTTCGAGTTGGTAACTCTGTGGTTTCTGTACCA 576
|||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||
Sbjct 720 AGAGAATCATTCGCGACTCTTCAAGAGCTTCGAGTTGGTAACTCTGCAGTTTCTTTACCA 779
Query 577 ACAACACCAGGAGGTAACGAAATGACACATAGAGACTCAGATTGTGCGACTCCACCTCAA 636
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 ACAACACCAGGAGGTAACGAAATGACACATAGAGACTCAGATTGTGTGACTCCACCTCAA 839
Query 637 GGGAGAACAGAGTCAAGCTTCGACGACTTAGCTGTTCATAACACAAGGAGACAAAACAAT 696
||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 840 GGGAGGATAGAGTCAAGCTTCGACGATTTAGCTGTTCATAAAACAAGGAGACAAAACAAT 899
Query 697 GATCAAAATgaagaagaagaagaagaagaagaagaagaagaTGGTAATAACAATTCGAAC 756
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 GATCAAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTAATAACAATGGGAAC 959
Query 757 TGGAGACTATCTTGGCCTCCTTCTGTAAAAA-GAGTAGCGTTTAAACAGTTGCTTTTGTT 815
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 CGGAGACTATCTTGGCCTCCTTCTGTAAAAAAGAGTAGCGTTTAAACAGTTGCTTTTGTC 1019
Query 816 ATTTGCTTGA 825
|||||||||
Sbjct 1020 -TTTGCTTGA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5