BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355742
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37860.1 | Symbols: | Heavy metal transport/detoxification ... 1227 0.0
> AT5G37860.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:15069578-15070555 REVERSE LENGTH=789
Length=789
Score = 1227 bits (664), Expect = 0.0
Identities = 761/805 (95%), Gaps = 17/805 (2%)
Strand=Plus/Plus
Query 1 ATGCCAAGAAACGTCTATGAACCTTTGAAGACATATTTTCTCAAAGTTAACATCAACTGC 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGCCACGAAACGTCTACGAACCTTTGAAGACATATTTTCTCAAAGTTAACATTAACTGC 60
Query 61 CAAGGATGTAAGAGGAAAGTGAAGAAAACACTTAGAAAAATTGAAGGTGTTTACTCTGTT 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGGATGTAAGATGAAAGTGAAGAAAACACTTAGAAAAATTGAAGGTGTTTACTCTGTT 120
Query 121 GATATAGACACAGATCAGGAAGCAGTGATCGTTAGAGGTAACTTAGATCCAGAGATTCTG 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 121 GATATAGACACAGATCAGGAAGCAGTGATTGTTAGAGGTAACTTAGATCCAGAGATTTTG 180
Query 181 GTCAAGAAGTTGAACAAAAGAGGGAAACATGCTCAGCTTATGTTCTTGACGCCTTACCAT 240
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTCAAGAAGTTGAACAAGAGAGGGAAACATGCTCAGCTTATGTTCTTGACTCCTTACCAT 240
Query 241 AAGGACCAGTACTTTGGTAATCATCAAGCTGGTCTTAACCATGACAACAGAAGCTTGGGG 300
|||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 241 AAGGACCAATACTTTGGTAATCATCAAGCTGTTCTTAATCATGACAACAGAAGCTTGGGG 300
Query 301 AACACACAATACAATTTCGGAAGCAATCACAACAATGTCCCAAGTTACGAAAGGCAGAGT 360
|||||||||||||||||||||||||||||||||||||| |||||||| | || || |
Sbjct 301 AACACACAATACAATTTCGGAAGCAATCACAACAATGTGCCAAGTTATG-AA---AG-G- 354
Query 361 CTTCTTAATCATCAGAGtgatgaagagatgatgatgatgatgaacatgaaacctgtgatg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ---CTTAATCATCAGAGTGATGAAGAGATGATGATGATGATGAACATGAAACCTGTGATG 411
Query 421 atgaacgatgCAGATTACTTCGAAATGAGTGATTCACCTGAAGATTTCCAAGAGCTATTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATGAACGATGCAGATTACTTCGAAATGAGTGATTCACCTGAAGATTTCCAAGAGCTATTT 471
Query 481 GGAGAAATACCGCAAAGACACAACAACAACTATGGAGAAGTGAAACCAAATCTGATGAGG 540
|| |||||||||||||||||||||||| || | ||| |||||||||||||||||||||
Sbjct 472 GGGGAAATACCGCAAAGACACAACAACTACGA---AGATGTGAAACCAAATCTGATGAGG 528
Query 541 GACATGGATCTTGGATATTCTAATGCATACCCTGCAACAGAAGCAATGAACATGCAGATT 600
||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 529 GACATGGATCTTGGATACTCTAATGCATACCCTGCAGCAGAAACAATGAACATGCAGATT 588
Query 601 GGAGGAAGAGTAAATAATATGATGGTGACTGAGAGAGGTTT-CAATGGTCAGATGATGAA 659
|||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 589 GGAGGAAGAGTAAATAATATGATGGTGAATGAGAGAGGTTTTCA-TGGTCAGATGATGAA 647
Query 660 TGAGAGAGGTTTCCATGGTCAGATGATGACTGGTCCATCTCTTGTTCCTCAGTCTATGAA 719
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 648 TGAGAGAGGCTTCCATGGTCAGATGATGAATGGTCCATCTCTTGTTCCTCAGTCTATGAA 707
Query 720 TCATGAACAGTTCAGCTCAAGACCACTTCAGTCTATGAGTCACGAACAGTTCAGTTCAAG 779
||||||||||||||||||||| ||| |||||||||||| ||| | |||||||| |||||
Sbjct 708 TCATGAACAGTTCAGCTCAAGGCCAGTTCAGTCTATGAATCA--A-CAGTTCAGCTCAAG 764
Query 780 ACCAGTTCATGGCTTTTACTACTGA 804
|||||||||||||||||||||||||
Sbjct 765 ACCAGTTCATGGCTTTTACTACTGA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5