BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355743
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00753.1 | Symbols: | Pseudogene of AT5G37890; seven in abs... 719 0.0
> AT4G00753.1 | Symbols: | Pseudogene of AT5G37890; seven in absentia
(SINA) protein, putative | chr4:322364-323033 FORWARD
LENGTH=670
Length=670
Score = 719 bits (389), Expect = 0.0
Identities = 511/568 (90%), Gaps = 15/568 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAGTGTTCTCAGATCAGTCATTGTCCCATGCCGAAATGCAAAGTTAGGTTGCACT 60
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 109 ATGGAGAGTGTTCTCAAATCAGTCATCGTCCCATGCCGAAACGCAAAGTTAGGTTGCACT 168
Query 61 GAGAATATTCCTTATGGGAGAGACTCAAATCATGAGAAGAAATATTGCAGATTCTCTCTA 120
||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||||
Sbjct 169 AAGAATGTTCCTTATGGGAGAGACTCAAGTCATGAGAAGGAATATTGCAGTTTCTCTCTA 228
Query 121 TGTTCTTGCCCTGAAATCAAAGAATGCAATTACACTGGCTTATACAATGAGATCTTATTC 180
||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 229 TGTTCTTGCCCTGAAATCAAAGAATGCAAATACACTGGCTTATACAA--AG--------- 277
Query 181 CACTATCTAGTATCCCACCTTTTAAAGCCCGATTGTTTTTTCACCTTTGGTGAACCGAGG 240
| ||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 278 -A-GATC-A-TATCCCACCCTTTAAAACCCGATTGTTTTTTCACCTTTGGTGAACCGAGG 333
Query 241 AATGTGCGGATGGCGATAAACGATAAGAATTTGGTTCTTATGACGCTTCCAAAGACTTTA 300
||||||| |||||||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct 334 GATGTGCGAATGGCGATAAACGATAAGTCTTTGGTTCTTATAACGCTTACAAAGACTTTA 393
Query 301 TTGTTCGTTGTGCAATGTTTTAGAGAGCCAAATGGTGTTTATGTGGCTTTAAATAGTCTT 360
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||
Sbjct 394 TTGTTCGTTGTGCAATGTTTTAGAGAGCCAAACGGTGTTTATGTGGCTGTAAATTGTATT 453
Query 361 GCACCATTGGGTCCAGAAGTGGAGAAGTTCTCATATCGAATCTCTTACTATTTTGATGGA 420
|||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 454 GCACCATTGGCTCCTGAAGTGGAGAAGTTCTCATATCGAATCTCTTACTCGTTTGATGGA 513
Query 421 GGTACTTGTAGTCACAAATTGCCGGAGATGAAGAGGATTCTTGAAGTGAGTTATCAAACC 480
| |||||| ||||| ||| ||||||||||||||| |||||||||||||||| | |||||
Sbjct 514 CGCACTTGTTGTCACGAATCGCCGGAGATGAAGAGAATTCTTGAAGTGAGTTTTGAAACC 573
Query 481 CCTCAAGATAAAAATTTCATGTTTGTTTCTAACAGTTTATTGTGTGGTGAAGTGTTGGAG 540
||| ||||||||||| ||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 574 CCTAAAGATAAAAATGTCATGTTTGTTCCTAATAGTTTATTACGTGGTGAAGTGTTGGAG 633
Query 541 ATGGAGCTTTGTATATCGGAAATTAAAT 568
|||||||||||||||||| || ||||||
Sbjct 634 ATGGAGCTTTGTATATCGCAAGTTAAAT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27377610115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5