BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355755
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07910.1 | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:24... 1818 0.0
> AT1G07910.1 | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2445470-2454645
FORWARD LENGTH=3787
Length=3787
Score = 1818 bits (984), Expect = 0.0
Identities = 1094/1148 (95%), Gaps = 4/1148 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGATCTTGTCAAAGGAAAATATTGGCCAAAGGTTGCTGATGAACATCGTAAAAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2383 ATGGGTGATCTTGTCAAAGGAAAATATTGGCCAAAGGTTGCTGATGAACGTCGTAAAAAA 2442
Query 61 CCACAATCGATTATGTTGGCTGACAAAAATGCTCCAAATGAAGATGTCTGGAGACAGATT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2443 CCACAATCGATTATGTTGGCTGACAAAAATGCCCCAAATGAAGATGTCTGGAGACAGATT 2502
Query 121 GAAGACATGTGTCGAAGAACTAGGGCTTCTGCAGTTCCAATCGTTGCTGATTCTGAAGGA 180
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503 GAAGATATGTGTCGGAGAACTAGGGCTTCTGCAGTTCCAATCGTTGCTGATTCTGAAGGA 2562
Query 181 ACCGATACAAATCCATATTCACTTGATGCCTTGGCTGTATTCATGTTCCGGGTACTTCAA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2563 ACCGATACAAATCCATATTCACTTGATGCCTTGGCTGTATTCATGTTCCGTGTACTTCAA 2622
Query 241 CGAGTTAACCATCCGGGAAAGCTCGACAAGGAATCTTCAAATGCAGGCTATGTGCTATTG 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2623 CGAGTTAACCATCCGGGAAAGCTCGACAAGGAATCTTCAAATGCAGGTTATGTGCTATTG 2682
Query 301 ATGTTTTATCACCTTTATGAGGGAAAGAACCGCAATGAATTTGAGAGTGAATTGATTGAG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2683 ATGTTTTATCACCTTTATGAGGGAAAGAACCGTAATGAATTTGAGAGTGAATTGATTGAG 2742
Query 361 CGCTTTGGCTCCCTCATCAAGATGCCACTATTGAAATCAGACAGGACTCCTTTACCTGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2743 CGCTTTGGCTCCCTCATCAAGATGCCACTATTGAAATCAGACAGGACTCCTTTACCTGAT 2802
Query 421 CCTGTTAAATCAGTTCTTGAGGAGGGCATAAATTTGTTCAATCTCCACAGCAGAAGACAT 480
||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 2803 CCTGTTAAATCAGTTCTTGAGGAGGGCATTGATTTGTTCAATCTCCATAGTAGAAGACAT 2862
Query 481 GGGAGACTCGAGTCGACAAAAGGAACATATGCAGCAGAATGGACCAAATGGGAGAAACAA 540
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2863 GGGAGACTCGAGTCAACAAAAGGAACATATGCAGCGGAATGGACCAAATGGGAGAAACAA 2922
Query 541 CTACGAGATACTTTAGTTGTGAATTCTGAGTATCTCAATTCTATTCAGGTTCCATTTGAG 600
|||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2923 CTACGAGATACTCTAGTTGCAAATTCTGAGTATCTCAGTTCTATTCAGGTTCCATTTGAG 2982
Query 601 TCTGTGGTTCATCTAGTGCGAGAAGAGCTAAAAA-ATATCGCAAAGGGTGAATACAAGCC 659
||| ||||||||| |||||||||||||||||||| | || || |||||||| ||||||||
Sbjct 2983 TCTATGGTTCATCAAGTGCGAGAAGAGCTAAAAACA-ATAGCGAAGGGTGATTACAAGCC 3041
Query 660 ACCAAGTTCAGAGAAAACAAAACATGGGTCTATTGTTTTCGCTGCCATCAACTTGCCTGC 719
||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 3042 ACCAAGTTCGGAGAAAAGAAAACACGGGTCTATTGTTTTCGCTGCCATCAACTTGCCTGC 3101
Query 720 TACTCAAGTTCACAGTCTTCTTGAAAAGTTAGCCGTAGCAAACCCAACAATGAGATTTTT 779
|||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||
Sbjct 3102 TACTCAAGTTCACAGTCTTCTTGAAAAGTTGGCTGCAGCAAACCCAACAATGAGATCTTT 3161
Query 780 TCTAGAGGGTAAGAAAAAGACCATACAGGAAAAACTTGAACGGTCTCATGTGACGCTTGC 839
||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct 3162 TCTAGAGGGAAAGAAAAAGAGCATACAGGAAAAACTTGAACGGTCTCACGTGACGCTCGC 3221
Query 840 CCACAAGAGAAGCCATGGCGTAGCAGCTGTAGCCAGCTATGGTCAGCACTTGAACAGAGA 899
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 3222 CCACAAGAGAAGCCATGGCGTAGCAACTGTAGCCAGCTATAGTCAGCACTTGAACAGAGA 3281
Query 900 GGTACCCGTAGAGCTCACGGAGCTCATCTACAACGACAAGATGGCAACTCTAACTGCCAA 959
|||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
Sbjct 3282 GGTACCCGTAGAGCTCACCGAGCTCATCTACAACGACAAGATGGCTGCTCTAACAGCCCA 3341
Query 960 TGTCGGATGTGTGGACGGAGAGACGGTAGTCTCCAAGAACGAATGGCCACATGTTACGTT 1019
||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 3342 TGTTGGATCTGTGGACGGAGAGACCGTAGTCTCCAAGAACGAATGGCCACATGTTACATT 3401
Query 1020 GTGGACTG-GAGAAGGCGTAACTGCGAAAGAGGCCAACACGTTACCTCAGCTTTACTTAG 1078
|||||| | | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3402 GTGGACAGCG-GAAGGCGTTACTGCGAAAGAGGCCAACACGTTACCTCAGCTTTACTTAG 3460
Query 1079 AAGGGAAGGCGAGCCGCTTAGTGATAGATCCTCCGGTCTCAATCTCAGGTCCTCTGGAAT 1138
|||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 3461 AAGGAAAGGCGAGCCGCTTGGTGATAGATCCTCCGGTGTCAATCTCAGGTCCTCTGGAGT 3520
Query 1139 TTTTCTGA 1146
||||||||
Sbjct 3521 TTTTCTGA 3528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5