BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355758

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18196.1 | Symbols:  | Heavy metal transport/detoxification ...   429    1e-119


> AT2G18196.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr2:7920508-7922326 REVERSE LENGTH=880
Length=880

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 285/310 (92%), Gaps = 6/310 (2%)
 Strand=Plus/Plus

Query  1    ATGGGTTTGGGCTCCTTCATCTCTACCATCACATACTGTTTGTTCCTTCGCTATCCACAC  60
            |||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||| 
Sbjct  59   ATGGGTTTCGGCTCCTTCATATCTACCATCACTTACTGTTTGTTCTTTCGCTATCCACAT  118

Query  61   AAGAAGCCTAAGCACAAAA--GT----CACCTCAACTATTACCACACCATGCCAAGGGCT  114
            |||||||| |||  |||||  ||    ||||||||| |||||||||||||||||| ||||
Sbjct  119  AAGAAGCCAAAGTTCAAAAGTGTGAGCCACCTCAACCATTACCACACCATGCCAATGGCT  178

Query  115  CGTCCACTTTCTTTACAGACGATAGACCTGACAGTAAGGATGTGCTGCAGTGGATGCGAG  174
            ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct  179  CGTCCACTTTCTTTACAGACGATAGACCTGAAAGTAAGGATGTGTTGCAGTGGATGTGAG  238

Query  175  AGAGTAGTCAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCTG  234
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  239  AGGGTTGTCAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCTA  298

Query  235  GAGATGGAGAGAGTTACGGTGGTTGGGTACGTGGAGAGGAAGAAGGTGCTCAAGGCAGTG  294
            |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  299  GAGATGGAGAGAGTAACGGTGGTTGGGTACGTAGAGAGGAAGAAGGTGCTCAAGGCGGTG  358

Query  295  AGAAGAGCCG  304
            ||||||||||
Sbjct  359  AGAAGAGCCG  368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5