BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355773
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38200.1 | Symbols: | SEC7-like guanine nucleotide exchange... 632 3e-180
AT4G38220.2 | Symbols: | Peptidase M20/M25/M40 family protein ... 134 4e-30
> AT4G38200.1 | Symbols: | SEC7-like guanine nucleotide exchange
family protein | chr4:17915293-17922732 FORWARD LENGTH=5294
Length=5294
Score = 632 bits (342), Expect = 3e-180
Identities = 428/471 (91%), Gaps = 0/471 (0%)
Strand=Plus/Plus
Query 496 AGTTCATCGCCATCCACATTTTCTCCACGTCCTAACGAAGCTTCTTGGGATGCTGAAACT 555
||||||| ||||| ||||||||| ||| ||||| |||| ||||||||||||||| |||
Sbjct 3988 AGTTCATTTCCATCTACATTTTCTTCACATCCTAGTGAAGTTTCTTGGGATGCTGAGACT 4047
Query 556 TCAGCTATGGCGGCACAGTCTCTGGTGGACCTATTTGTCAGCTTTTTTACTGTTATAAGG 615
||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||
Sbjct 4048 TCAGCTATGGCGGCACAGTATCTGGTAGACCTATTTGTCAGTTTTTTTACTGTGATAAGG 4107
Query 616 TCCCAACTTTCAAGTGTAGTATCTTTACTCGCTGGTCTCATAAGAAGTCCAGCTCAGGGT 675
|| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 4108 TCTCAACTTTCAAGTGTAGTATCCTTACTTGCTGGTCTTATAAGAAGTCCAGCTCAGGGT 4167
Query 676 CCTACAGTAGCTGGAGTGGGTGCGTTGCTGTGGCTAGCGGACGAACTGGGTGGCAGTTTC 735
|||||||||||||| || || ||||||||| || | || |||||| |||||| ||| |||
Sbjct 4168 CCTACAGTAGCTGGGGTTGGCGCGTTGCTGCGGTTGGCAGACGAATTGGGTGACAGGTTC 4227
Query 736 TCAGAAGATGAGTGGAAGGAGAtttttttGGCTGTGAAAGAAGCTGCTTCATTGACATTG 795
|| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 4228 TCGGAAAATGAGTGGAAGGAGATTTTTTTGGCTGTGAACGAAGCTGCTTCATTGACATTG 4287
Query 796 TCTAGCTTCATAAAAATACTGAGAATCGTAGATGACATTCCAGATGAGGAAACATTGTCT 855
||||| ||||| |||| |||||||| | | |||||||||||||||||||| |||||||||
Sbjct 4288 TCTAGTTTCATGAAAACACTGAGAACCATGGATGACATTCCAGATGAGGATACATTGTCT 4347
Query 856 GATCAGGACTTTAGTAATGAAGATGACGTCGACGAGGACAGCCTGCAAATTATGTCTTAT 915
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 4348 GATCAGGACTTTAGTAATGAAGATGACATCGACGAGGACAGCCTGCAAACTATGTCTTAT 4407
Query 916 GTTGTTTCAAGAACAAAGAGTCACATAACCGTCCAGTTGCAAGTTGTTCAG 966
||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 4408 GTTGTGGCAAGAACAAAAAGTCACATAACCGTCCAGCTGCAAGTTGTTCAG 4458
Score = 230 bits (124), Expect = 5e-59
Identities = 136/142 (96%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 163 GCAGCTGATGAAAGGAAGAACATTGTATTGTTGGCCTTTGAGACAATGGAAAAAATTGTC 222
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3451 GCAGCTGATGAAAGGAAGAACATTGTATTGTTGGCCTTTGAGACGATGGAAAAAATTGTC 3510
Query 223 CGAGAGTATTTTTCATATATCACAGAGACGGAGGCAACAACTTTTACTGATTGTGTTAGA 282
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 3511 CGAGAGTACTTTTCATATATCACAGAGACGGAGGCAACAACCTTTACTGATTGTGTTCGA 3570
Query 283 TGCCTTATAACTTTCACAAACA 304
||||| |||||||| |||||||
Sbjct 3571 TGCCTCATAACTTTTACAAACA 3592
Score = 193 bits (104), Expect = 6e-48
Identities = 128/140 (91%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1138 GAGTTGGAAGAGACCAGGCAGCCTAAAAACTGGATTCTACCCATGGGAACAGCATCGAAG 1197
||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 4801 GAGTTGGAAGAAACCAGGCAGCCCAAAAACTGGATTCTACCCATGGGAGCAGCCTCGAAG 4860
Query 1198 GAAGAAGCAGCAGCGAGATCTCCGCTAGTAGTTACAGTGTTGAAGACACTGAGGGGACTG 1257
||||||||||||||||||||||| ||||| ||| ||||| ||||| | ||||||| ||||
Sbjct 4861 GAAGAAGCAGCAGCGAGATCTCCCCTAGTGGTTGCAGTGCTGAAGGCTCTGAGGGAACTG 4920
Query 1258 GAAAGAGATTCATTCAAGAG 1277
|||||||||||||||||||
Sbjct 4921 AAAAGAGATTCATTCAAGAG 4940
Score = 191 bits (103), Expect = 2e-47
Identities = 146/167 (87%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 964 CAGAAGAAACTGAGGAGGGCATGCTCTATCCTGGAGCTATCCGAACCTCCCATGCTTCAT 1023
||||||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 4582 CAGAAGAAAGTGAGGAGAGCGTGCTCTATCCTGGAGCTCTCTGAACCTCCCATGCTTCAT 4641
Query 1024 TTCGAAAATGACACGCACCAGAACTACCTGGATGTTCTCCAAGACC-TACTGACATACAA 1082
||||||||||||||| |||||||||||||| |||| |||| || || ||||| | ||
Sbjct 4642 TTCGAAAATGACACGTTTCAGAACTACCTGGACATTCTTCAAG-CCATAGTGACAAATAA 4700
Query 1083 TCCAGGAGTGTCCTTGGAGCTAAACATAGAGTCTGAACTGATCACAG 1129
|||||||||||| |||||||||||| |||||||| | ||||| ||||
Sbjct 4701 TCCAGGAGTGTCGTTGGAGCTAAACGTAGAGTCTCAGCTGATGACAG 4747
> AT4G38220.2 | Symbols: | Peptidase M20/M25/M40 family protein
| chr4:17925180-17927097 FORWARD LENGTH=1551
Length=1551
Score = 134 bits (72), Expect = 4e-30
Identities = 113/133 (85%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 32 TCCTTACAGCAGCAGATGATTCAAATCCGTTT-TGGAGGATCTTGGAAAAGGCTGTGAAG 90
|||||||||||||||||||||||||||| || ||| || |||||||||| ||||| |||
Sbjct 1072 TCCTTACAGCAGCAGATGATTCAAATCC-TTGGTGGGGGCTCTTGGAAAATGCTGTTAAG 1130
Query 91 GACGCTAGAGATAAGACTAGTAAGCCTGAGATATTCCCTGCATCAACAGACGCTCGTTAC 150
|| || ||| || ||| |||||||||||||| |||||||||||||| || ||||| |||
Sbjct 1131 GAAGCCGGAGGTAGGACCAGTAAGCCTGAGATTTTCCCTGCATCAACGGATGCTCGCTAC 1190
Query 151 TTTTGGAAAGCTG 163
||| | || ||||
Sbjct 1191 TTTCGCAAGGCTG 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5