BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355774
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38225.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 327 6e-89
> AT4G38225.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17927198-17928901
FORWARD LENGTH=1249
Length=1249
Score = 327 bits (177), Expect = 6e-89
Identities = 330/399 (83%), Gaps = 29/399 (7%)
Strand=Plus/Plus
Query 16 ATGTTATATTCCGCCGGAAACTCCCTCTTATGGAGGAACCGTACAC-----CCAT--ACC 68
||||||| ||| |||||| ||||||||||||| ||| |||||||| || | |||
Sbjct 33 ATGTTATCGTCCTCCGGAAGCTCCCTCTTATGGCGGAGCCGTACACATGTGCC-TGCACC 91
Query 69 ACCGTCTCGACCTCCGCCTTC-TTTCAAATCTCTCGT-CTCTCCCTTCTCTTCCATTTTA 126
||| |||| || |||| | || ||| ||||| | || |||||||||||||| ||||
Sbjct 92 GCCGCCTCGGTCTTCGCCACCGCTT-AAAGCTCTC-TCCTTTCCCTTCTCTTCCAGTTTA 149
Query 127 GT-GTTTATGATGAACAGAACCAGAATTTCCCCTATTTCTTGCTCAGCTGAAA-TCTCCT 184
| |||||| | ||||||||| |||||| ||| |||| || |||||||||| | ||||
Sbjct 150 -TGGTTTAT--T-CACAGAACCACAATTTCTCCTCTTTCGTGTTCAGCTGAAAGT-TCCT 204
Query 185 CGAATG-TTGCCCTCGCGCAGAGCCAGCCTTCCTCTGATTACAATCCCTTGTCTGATTTC 243
|| | | ||||||| ||||||||||||||| || |||||| |||||||| ||| || |||
Sbjct 205 CGGA-GATTGCCCTGGCGCAGAGCCAGCCTGCCCCTGATTTCAATCCCTGGTCGGAGTTC 263
Query 244 GCTCAAAATGTTTCTGGCGAATGGGACGGTTTCGGAGCAGATTTTTCACGGGAAGGGAAA 303
||||||||||| ||||||||||||||||||||||||||||||||| || | |||||| ||
Sbjct 264 GCTCAAAATGTGTCTGGCGAATGGGACGGTTTCGGAGCAGATTTTACATGCGAAGGGCAA 323
Query 304 CCGATTGAACTA--T----CAGTGGTTCCAGAAGC-TTATAGAGAATGGGAAGTGAAGGT 356
||| | |||||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct 324 CCGCTAGAACTACCTGAATCAGTGGTTCCAGAAGCCTT-TAGAGAATGGGAAGTGAAGGT 382
Query 357 GTTCGATTGGCAAACGCAGTGTCCCACTCTTGCTCAGCC 395
|||||||||||| |||||||||||||||||||| |||||
Sbjct 383 GTTCGATTGGCAGACGCAGTGTCCCACTCTTGCCCAGCC 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5