BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355776

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G32960.1 | Symbols:  | Domain of unknown function (DUF1985) ...   433    8e-121


> AT3G32960.1 | Symbols:  | Domain of unknown function (DUF1985) 
| chr3:13499677-13500415 FORWARD LENGTH=645
Length=645

 Score =  433 bits (234),  Expect = 8e-121
 Identities = 276/296 (93%), Gaps = 4/296 (1%)
 Strand=Plus/Plus

Query  1    ATGATGAAGACAAAGTATGATATTCATGGATTTCCTCTAGCACTACACATTTGGATTCTT  60
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  349  ATGATGAAGCCAAAGCATGATATTCATGGATTTCCTCTAGCACTACACATTTGGATTCTT  408

Query  61   GAGTCTATTCCAATGCTACAAACAGCCTACAGCCGAATCAGTTTAATAGAGAGGCCGACT  120
            |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||
Sbjct  409  GAGTCTATTCCAATGCTACAAACAACCTACAACCGAATCAGTTTAATAGAGAGGCCTACT  468

Query  121  GCATTCTTGTGTGAGAAATACACGAGCTTACCATCACCACAACTTTCTCAAATACAGAAT  180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct  469  GCATTCTTGTGTGAGAAATACACGAGCCTACCATCACCACAACTTTCTCAAATACAGAAC  528

Query  181  ATTGAAGCATC-TAATCATCTGAATGTATTTTGCATCTTACCTTCAATACCTGATGATCC  239
            ||||||||||| || ||||| ||| || |||| ||||||||| |||||||||||||||| 
Sbjct  529  ATTGAAGCATCATA-TCATCCGAAGGTGTTTTTCATCTTACCGTCAATACCTGATGATCT  587

Query  240  TGAAGATAAAGTTTCACTAGAAGACGAAGATGATCCAGAATTAGG-TCTGCTGGTC  294
            |||||||||||||||| | ||||||||||||||||||||||| || | ||||||||
Sbjct  588  TGAAGATAAAGTTTCATTGGAAGACGAAGATGATCCAGAATT-GGATATGCTGGTC  642



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5