BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355779
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41940.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 1882 0.0
> AT5G41940.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr5:16781947-16785576 FORWARD LENGTH=1867
Length=1867
Score = 1882 bits (1019), Expect = 0.0
Identities = 1137/1195 (95%), Gaps = 4/1195 (0%)
Strand=Plus/Plus
Query 494 TGACGGAATATGAAAACCTGCGGAGACAGTGTCGTGAGATTCATGAACGCAATGAAAATG 553
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 550 TGACGGAATATGAAAACCTGCGGAGACAGTGTCGCGAGATTCATGAACGCTATGAAAATG 609
Query 554 GCTGCGACTCAAAGCAGACAGCTCAGAGCAGCAACACTGAAGACAGTCAGGTTCTTGATT 613
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 610 TCTGCGACTCAAAGGAGACAGCTCAGAGCAGCAACACTGAAGACAGTCAGGTTCTTGAAT 669
Query 614 CCCATGATATTGAGGAAGTCGAGAGTTCCACAAGATCCATCACCGTAGAAGAATCAGAGA 673
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 670 CCCATGATATTGAGGAAGTCGAGAGTTCCACAAGAACCATCACCGTAGATGAATCAGAGA 729
Query 674 AGTTGAATTCTGAATCGATTATGCAGGATGAGAACTGTGAAAAGAGCGATGTCACCACTG 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 730 AGTTGAATTCTGAATCGATTATGCAGGATGAGAACTGTGAAAAGAGCGATGTCACCACAG 789
Query 734 AAGATGCTGCTGGTAATGACTCAGACTCAACCAACCCTGACGAAACCGAGACTTCACCTC 793
||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 790 AAGATGCTGCTGGTAATGATTCAGACTCAACCAATCCTGAAGAAACCGAGACTTCACCTT 849
Query 794 TTCTAGCTAACGAAGAAGTAGAAAGCCACAATACTGTTAACCAAGAAAAAGACAA-TTCG 852
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 850 TTCTAGCTAACGAAGAAGTAGAAAGCCACAATACTGTTAACCAAGAAAAAGA-AATTTCG 908
Query 853 TCTCCATCATCAAAGCCAAAATCTCAGGCAGCGGAGGAGGATTTCATGTCAACGTGGCAG 912
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 909 TCTCCATCATCAAAGCCAAAATCTCAGGCAGCGGACGAGGATTTCATGTCAACTTGGCAG 968
Query 913 AGAATTATTCGCCTAGATGCCGTGAGAGCAAATGACGAATGGGTGCCCTACTCACCGTCT 972
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 969 AGAATTATCCGCCTAGATGCTGTGAGAGCAAATGACGAATGGGTGCCCTACTCACCAACT 1028
Query 973 CAAGCTGCTGTTTCTGAGACAAAAGCCCGAGGAATAGCCATACAGGTTGGTCTCAATGAC 1032
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1029 CAAGCTGCTGTTTCTGAGACAAAAGCCCGGGGAATAGCCATTCAGGTTGGTCTCAATGAC 1088
Query 1033 TATGACCACTTGGAACCCTGCCGGATATTCCATGCAGCCCGCCTGGTCGGTATCCTTGAA 1092
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1089 TATGACCACTTGGAACCCTGCCGGATATTTCACGCAGCCCGCCTGGTCGGGATCCTTGAA 1148
Query 1093 GCCTACGCAGTCTACGATCCAGAAATCGGTTACTGTCAAGGAATGAGCGACTTACTATCT 1152
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1149 GCCTACGCAGTCTATGATCCAGAAATTGGTTACTGTCAAGGAATGAGCGACTTACTATCT 1208
Query 1153 CCTTTAATCACAGTGATGGAAGATGACGTCTTAGCATTCTGGTGCTTTGTCGGGTTCATG 1212
||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1209 CCTTTAATCGCAGTGATGGAAGACGACGTCTTAGCATTCTGGTGCTTTGTTGGCTTCATG 1268
Query 1213 AGTAAAGCAAGGCATAATTTCCGGCTAGACGAGGTTGGAATCAGGCGACAACTCTCAATG 1272
||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1269 AGTAAAGCACGGCATAATTTCCGGTTAGACGAGGTTGGAATCAGGCGGCAACTCTCAATG 1328
Query 1273 GTATCGAAAATCATTAAAGTT-AAAGACATTCACTTGTACCGACACTTGGAGAACCTTGA 1331
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GTATCGAAAATCA-TAAAATTCAAAGACATTCACTTGTACCGACACTTGGAGAACCTTGA 1387
Query 1332 AGCAGCAGACTGCTTCTTTGTATACCGTATGGTGGTAGTTCTGTTCAGACGAGAACTAAC 1391
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1388 AGCAGAAGACTGCTTCTTTGTATACCGTATGGTTGTAGTTCTGTTCAGACGAGAACTAAC 1447
Query 1392 CTTTGAGCAGACGCTGTGTCTCTGGGAAGTAATGTGGGCGGATCAAGCCGCAATAAGAAC 1451
||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1448 CTTTGAGCAGACGTTGTGTCTCTGGGAAGTAATGTGGGCGGATCAAGCTGCAATACGAAC 1507
Query 1452 TGGGATTGCAAAGGCGACTTCTGGGAGAATCCGGTTACGAGCACCACCAACAGAAGATTT 1511
||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 1508 TGGGATTGCGAAGGCGACATGGGGGAGAATCCGGTTACGAGCACCACCGACAGAAGATTT 1567
Query 1512 GTTACTTTATGCAATAGCAGCGAGCGTGTTGCAGAGGAGAAAAACAATCATAGAGAAATA 1571
||| ||||| || ||||| || |||||| |||||||||| || || || |||||||||||
Sbjct 1568 GTTGCTTTACGCGATAGCTGCAAGCGTGCTGCAGAGGAGGAAGACGATAATAGAGAAATA 1627
Query 1572 CAGTGGGATGGATGAGATAATGAAGGAATGTAACAGCATGGCTGGTCATCTTGATGTTTG 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 CAGTGGGATGGATGAGATAATGAAGGAATGTAACAGCATGGCTGGTCATCTTGATGTTTG 1687
Query 1632 GAAACTTCTAGACGATGCTCATGACTTAGTCGTCAAACTTCACGACAAGATCTAA 1686
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1688 GAAACTTCTAGACGATGCTCATGACTTAGTCGTCAATCTTCACGACAAGATCTAA 1742
Score = 597 bits (323), Expect = 1e-169
Identities = 377/403 (94%), Gaps = 3/403 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCCACGTCTACGATTGACGAAGGTCTTCTTCTCCCCGATCCTCGCCGGCAAATGG 60
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 96 ATGTTTCCACGACTACGATTGACGAAGGTCTTCTTCTCCCCGATCATCGCCGGGAAATGG 155
Query 61 ATCGTCTTTGCCGACGGTAGCAGCGGTGGCGGCGCCGGGAGAAATGGCTACTACGGCGGC 120
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||
Sbjct 156 ATCGTCTTTGCCGACGGTAGCAGCGGCGGCGGCGTTGGTAGAAATGGCTACTACGGTGGA 215
Query 121 TTATGGTCGTCGGCTATTGTTCCTTCCAATGTTGGTTTAGCTGTCGCTGTCACCGTCATG 180
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TTGTGGTCGTCGGCCGTTATTCCTTCCAATGTTGGTTTAGCTGTCGCTGTCACCGTCATG 275
Query 181 GCCGTGGCCGTGGCTTTCACCGTCTACTCTCGTAGAGGAGGCATTGGATCACCTTGGTCA 240
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 276 GCCGTGGCCGTCGCTTTCACCGTCTACTCTCGTAGAGGAAGCATTGGATCACCGTGGTCA 335
Query 241 CTGAGGAGAAGAAAGCGTGTTCTTCAACCTAAGCAGTGGAATGCTTTTTTCACAGAGGAA 300
|| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 336 CTAAGGAGAAGAAAGCGAGTTCTTCAACCTAAACAATGGAATGCTTTTTTCACAGAGGAA 395
Query 301 GGGCGACTCAGTGATGGAGGTG-CA--TTTCTGAAGAAAGTTCGTAGTGGGGGTGTACAT 357
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 396 GGGCGACTCAGTGATGGAGGTGTCAAATTTCTGAAGAAAGTTCGTAGTGGGGGTGTACAT 455
Query 358 CCAAGCATTAGACCAGAAGTTTGGCCGTTTCTCCTTGGAGTGT 400
|||||||| |||||||||||||||||||| || ||||||||||
Sbjct 456 CCAAGCATCAGACCAGAAGTTTGGCCGTTCCTTCTTGGAGTGT 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5