BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355810
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2191 0.0
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 569 2e-161
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 470 3e-131
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 455 7e-127
AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 405 7e-112
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 274 2e-72
> AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670001-16674966 REVERSE LENGTH=2268
Length=2268
Score = 2191 bits (1186), Expect = 0.0
Identities = 1522/1683 (90%), Gaps = 27/1683 (2%)
Strand=Plus/Plus
Query 109 GGTAAGCGAAAGCCGGAATATGATTTGGAGACCAAGCAACCCTTTCTCAAGAAACATAAG 168
|||||||| || ||| |||||| ||||||| |||| | || ||||||||| |||||||
Sbjct 461 GGTAAGCGTAACCCGCAATATGGTTTGGAGGCCAA-C--CCAATTCTCAAGAGACATAAG 517
Query 169 AAAATATCCAAG--G-A---GACAACCAAAG-GACTTGCTGATAGTCTCCAGCAGAACGA 221
|||||| |||| | | |||||| |||| | ||||| ||||||||||||||||||
Sbjct 518 AAAATAAACAAGAAGAAGGTGACAACGAAAGCTA-TTGCTTTTAGTCTCCAGCAGAACGA 576
Query 222 CTTGTTGGAGACAAACTCTGATCAGGCCAATTTAATTTCAGTCAAGGAAGCTGCCGTGAG 281
|||||||| |||||| ||||||||||| |||||||| ||||||||||||||||| || ||
Sbjct 577 CTTGTTGGTGACAAAGTCTGATCAGGCTAATTTAATCTCAGTCAAGGAAGCTGCAGTAAG 636
Query 282 AAAAAAGACGCTCTTTGTTGCCAATCTCAATTACGAAACTAAAATACCAAATATCATCGA 341
| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 637 AGAGAAGACGCTCTTTGTTGCCAATCTCCCTTATGAAACTAAAATACCAAATATCATCGA 696
Query 342 TTTCTTCAAAAAGGTTGGAAG-AGTTGTTCGTGTTCGACTTATTGTAAACCTCAAGGGTA 400
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 697 TTTCTTCAAAAAGGTTGG-AGAAGTTGTTCGTGTTCAACTTATTGTAAACCTCAAGGGTA 755
Query 401 AGCTTGTGGGCTGTGGCTTTGTTGAGTTTGCTTCT-TCTAAAGAAGCAAAGAAGGCGCTG 459
|||||||||| |||||||||||||||||||||||| | ||| |||||| || ||||||||
Sbjct 756 AGCTTGTGGGTTGTGGCTTTGTTGAGTTTGCTTCTGT-TAATGAAGCAGAGGAGGCGCTG 814
Query 460 CGAAAGAAGAACGGTGAATATTT-GCTCGATAATAAGATTTTTCTTGATGTGGCTAATAA 518
| ||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct 815 CAAAAGAAGAACGGTGAATGTTTAG-ACAATAATAAGATTTTTCTTGATGTGGCTAATAA 873
Query 519 GAAAGCTACATACCTTCCACCCAAGTACTGCATAGATCACAAGGTTTGGTACAAAGACTA 578
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 874 GAAAGCTACATACCTTCCACCCAAGTATTGCATAGATCACAAGGTTTGGGACAAAGACTA 933
Query 579 CCGTAGAGGAGATTGCCTTCTGATAGAAGAAGATGAGACACCTCCCGATTTTGATGAGAA 638
||||||| ||| ||| || |||||||||||||||| |||||| ||| || |||| |
Sbjct 934 CCGTAGACTAGAAAGCCATCCAATAGAAGAAGATGAGAGACCTCCTAATTCTGTTGAGGA 993
Query 639 AGTACTCTTTGTTTCCAATCTCTCTCCCCAAACTAAAATATCAGATATCTTCGATTTCTT 698
||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 994 AGTACTCTTTGTTGCCAATCTTTCTCCTCAAACTAAAATATCAGATATCTTCGATTTCTT 1053
Query 699 CAATTATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGAGGGTAAGCATGT 758
||||| ||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||
Sbjct 1054 CAATTGTGTTGGAGAAGTTGTAAGTATTCGACTTATGGTAAACCATGAAGGTAAGCATGT 1113
Query 759 GGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACTTAACAAAAAAGGCACTGGAAAACAA 818
||| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct 1114 GGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAACAAAAAAGGCACTGGAGAACAA 1173
Query 819 GAATGGTGAATATTTGCACAATCATAAGATTTTTCTTGATGTGGCTAAGAAAGCTCCATA 878
||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 1174 GAATGGTGAATATTTGCACGATCATAAGATTTTTATTGATGTGGCTAAGACAGCTCCATA 1233
Query 879 CCCTCCACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACG 938
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1234 CCCTCCAGGACCCAAGTACAACCTTGTAGAGAAGCTTTGTTACGAAGACTACCTTCGACG 1293
Query 939 AGAAAGCCTTCCGATAGAAGAAGA-GCAGACACCTCCTGATTTTGTTGAGGCAGTTGGCG 997
|||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 1294 AGAAAGCCTTCCGATAGATGAAGATG-AGACACCTCCTGAATTTGTTGAGGCAGTTGGCG 1352
Query 998 TAAGTACAAAGACGCTCTTTGTTGCCCATCTCTCTCGTAAAACTGAAATATCGCATATCA 1057
|||| | ||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 1353 TAAGGAAAAAGACGCTCTTTGTTGCCCATCTCTCACGCAAAACTGAAATAACGCATATCA 1412
Query 1058 TAAATTTCTTCAATGATGTTGGAGAAGTTGTTCATGTTCGACTTATTCTAAACCACA-AT 1116
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1413 TAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGGCTTATTCTAAACCACACA- 1471
Query 1117 GGCAAGCATTTGGGCTGTGGCTTTGTAGAGTTCGGTTCTGCTAACGAAGCAAAGAAGGCG 1176
||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 1472 GGCAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGGTTCTGCTAACGAAGCAAAGATGGCG 1531
Query 1177 TATGAAAA-GAAAAACGGTGAAAATTTGAACGATTGCAAGATTTTTCTTGAAGTGGCTAA 1235
| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1532 T-TGGAAACGAAAAACGGTGAATATTTGAACGATTGCAAGATTTTTCTTGAAGTGGCTAA 1590
Query 1236 GACAGCTCCAGACCCTCCACCCAAGTATTGCTTAGATCACATGGTTTGGTACGAAGACTA 1295
|| | |||| |||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 1591 GATGGTTCCATACCCTCCACCCAAGTATTGCATACATCACAAGGTTTGGTACGAAGACTA 1650
Query 1296 CCTTCGACGAGAACGCCTTCTGATAGAAGAAGATGAGACAGTGGAAGGACTTGATGA-AC 1354
||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 1651 CCTTCGACGAGAAAGCCTTCTGATAGAAGAAAATGAGACAGAGGAAGGACTTGATGACAC 1710
Query 1355 CTCCCGTTTTTGTTGAGGAAGCTGCCGTACTAAAAAATACGCTCTTTATTGCCAATCTCT 1414
||||| | ||||||||||| ||||||| |||||| ||||||||| ||||||||||||
Sbjct 1711 -TCCCGCTCTTGTTGAGGAATTTGCCGTAAGAAAAAAGACGCTCTTTGTTGCCAATCTCT 1769
Query 1415 CTCACAAAACTAAAATATCACATATCATCAAATTCTTCAAAGATGTTGGAGAAGTT-TTC 1473
| | || |||||||||||||||||||||||| || || |||||||||| ||||||| |||
Sbjct 1770 CACCCAGAACTAAAATATCACATATCATCAAGTTTTTTAAAGATGTTGCAGAAGTTGTTC 1829
Query 1474 CGCGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGGGTTGTGGCTTTGTCGAGTTT 1533
| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1830 -GTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGGGCTGTGGCTTTGTTGAGTTT 1888
Query 1534 GCCTCTGCTAATGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAAAATTTGCGCAGT 1593
|| |||| ||| |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1889 GCTTCTGTTAACGAAGCACAGAAGGCGCTGCAAAAGATGAATGGTGAAAATTTGCGCAGT 1948
Query 1594 CATAAGATTTTTCTTGACGTGGCTGAGAGAGCTCCATACCCTCTCCGACCCAAGTACAAC 1653
| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1949 CGTGAGATTTTTCTTGACGTGGTTGAGTTAGCTCCATACCCTCTCCGACCCAAGTACAAC 2008
Query 1654 CTTGCAGAGAAGCTTTGGCACGAACGAGAAAGCCTTCTGAAGAAACAGAAGGCATCTAAG 1713
| ||||||||| |||||||||||||||||||| ||||||||||||||||||| || | ||
Sbjct 2009 CATGCAGAGAAACTTTGGCACGAACGAGAAAGTCTTCTGAAGAAACAGAAGGAATATGAG 2068
Query 1714 TTGCTGAGCGAGAAGAGCGTATTCTGTGGTACGAAGATTATCTTCTCTTacgacgacgac 1773
|| ||||||||| || || |||||| |||| |||||||||||||||||||||||||||
Sbjct 2069 ATGTTGAGCGAGAGGACCGAATTCTGCGGTAAGAAGATTATCTTCTCTTACGACGACGAA 2128
Query 1774 gac 1776
|||
Sbjct 2129 GAC 2131
Score = 597 bits (323), Expect = 1e-169
Identities = 808/1030 (78%), Gaps = 82/1030 (8%)
Strand=Plus/Plus
Query 292 CTCTTTGTTGCCAATC--TCAATTACGAAACTAAAATACCAAATATCATCGATTTCTTCA 349
|||||||||||||||| || | | ||||||||||| || ||||| |||||||||||
Sbjct 998 CTCTTTGTTGCCAATCTTTCTCCT-C-AAACTAAAATATCAGATATCTTCGATTTCTTC- 1054
Query 350 AAAAG-GTTGGAAG-AGTTGTTCGTGTTCGACTTATTGTAAACC-TCAAGGGTAAGCTTG 406
|| | ||||| || |||||| || |||||||||| ||||||| | || ||||||| ||
Sbjct 1055 AATTGTGTTGG-AGAAGTTGTAAGTATTCGACTTATGGTAAACCATGAA-GGTAAGCATG 1112
Query 407 TGGGCTGTGGCTTTGTTGAGTTTGCTTCTTCTAAAGAAGCAAAGAAGGCGCTGCGA-AAG 465
|||| | |||||||||||||||||||||| || | ||| |||| ||||| ||| || ||
Sbjct 1113 TGGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAACAAAAAAGGCACTG-GAGAAC 1171
Query 466 AAGAACGGTGAATATTTGCTCGATAATAAGATTTTTCTTGATGTGGCTAATAAGAAAGCT 525
||||| ||||||||||||| |||| ||||||||||| |||||||||| ||||| ||||
Sbjct 1172 AAGAATGGTGAATATTTGCACGATCATAAGATTTTTATTGATGTGGC---TAAGACAGCT 1228
Query 526 ACATACCTTCC---ACCCAAGTACTGCATAGAT-CACAAGGTTTGGTACAAAGACTACCG 581
|||||| ||| |||||||||| | | | | | ||| |||| ||| |||||||||
Sbjct 1229 CCATACCCTCCAGGACCCAAGTACAACCTTG-TAGAGAAGCTTTGTTACGAAGACTACCT 1287
Query 582 TAGAGGAGATTGCCTTCTGATAGAAGAAGATGAGACACCTCCCG-A-TT-TT---G-A-- 632
| || |||| |||||| |||||| ||||||||||||||||| | | || || | |
Sbjct 1288 TCGACGAGAAAGCCTTCCGATAGATGAAGATGAGACACCTCCTGAATTTGTTGAGGCAGT 1347
Query 633 T---G--A-G--AAAGTA--CTCTTTGTTTCCAATCTCTCTCCCCAAACTAAAATATCAG 682
| | | | |||| | ||||||||| || ||||||| | | ||||| ||||| | |
Sbjct 1348 TGGCGTAAGGAAAAAG-ACGCTCTTTGTTGCCCATCTCTCACGCAAAACTGAAATAAC-G 1405
Query 683 -ATATCTTCGATTTCTTCAATTATGTTGGAGAAGTTGTT-AGTGTTCGACTTATTGTAAA 740
||||| | |||||||||| ||||||||||||||||| | |||||| |||||| ||||
Sbjct 1406 CATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCA-TGTTCGGCTTATTCTAAA 1464
Query 741 CCATGA-GGGTAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACTTAA-CA 798
||| | || ||||||||||||| || |||||| ||||||| |||||||||| || ||
Sbjct 1465 CCA-CACAGGCAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGGTTCTGCTAAC-GAAGCA 1522
Query 799 AAAAAGGCACTGGAAAAC-AAGAATGGTGAATATTTGCACAATCATAAGATTTTTCTTGA 857
|| | ||| ||| |||| || || |||||||||||| || || ||||||||||||||
Sbjct 1523 AAGATGGCGTTGG-AAACGAAAAACGGTGAATATTTGAACGATTGCAAGATTTTTCTTGA 1581
Query 858 TGTGGCTAAGAAAGCTCCATACCCTCCACGACCCAAGTACAACCTTGCA-GAGAAGCTTT 916
|||||||||| | |||||||||| | | ||||||||| | | || | ||| |||
Sbjct 1582 AGTGGCTAAGATGGTTCCATACCCT-C-C-ACCCAAGTA-TTGCATACATCACAAGGTTT 1637
Query 917 GTTACGAAGACTACCTTCGACGAGAAAGCCTTCCGATAGAAGAA---GAG-CAGA----- 967
| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 1638 GGTACGAAGACTACCTTCGACGAGAAAGCCTTCTGATAGAAGAAAATGAGACAGAGGAAG 1697
Query 968 --C---A---C-CTCCTGATTTTGTTGAGGCAGTTGGCGTAAGTACAAAGACGCTCTTTG 1018
| | | |||| | | ||||||||| | ||| |||||| | ||||||||||||||
Sbjct 1698 GACTTGATGACACTCCCGCTCTTGTTGAGGAATTTGCCGTAAGAAAAAAGACGCTCTTTG 1757
Query 1019 TTGCCCATCTCTCTCGTAAAACTGAAATATCGCATATCATAAA-TTTCTTCAATGATGTT 1077
||||| ||||||| | | |||| ||||||| |||||||| || ||| || || ||||||
Sbjct 1758 TTGCCAATCTCTCACCCAGAACTAAAATATCACATATCATCAAGTTTTTTAAA-GATGTT 1816
Query 1078 GGAGAAGTTGTTCATGTTCGACTTATTCTAAACCACAATGGCAAGCATTTGGGCTGTGGC 1137
| ||||||||||| ||||||||||||| ||||||||| || ||||| |||||||||||
Sbjct 1817 GCAGAAGTTGTTCGTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGGGCTGTGGC 1876
Query 1138 TTTGTAGAGTTCGGTTCTGCTAACGAAGCAAAGAAGGCGTATG-AAAAGAAAAACGGTGA 1196
||||| ||||| | ||||| |||||||||| |||||||| || |||||| || |||||
Sbjct 1877 TTTGTTGAGTTTGCTTCTGTTAACGAAGCACAGAAGGCGC-TGCAAAAGATGAATGGTGA 1935
Query 1197 AAATTTGAACGATT-GCAAGATTTTTCTTGAAGTGGCTAAGACAGCTCCAGACCCTC-C- 1253
||||||| | | | | ||||||||||||| |||| | || ||||||| |||||| |
Sbjct 1936 AAATTTGCGC-AGTCGTGAGATTTTTCTTGACGTGGTTGAGTTAGCTCCATACCCTCTCC 1994
Query 1254 -ACCCAAGTA 1262
|||||||||
Sbjct 1995 GACCCAAGTA 2004
Score = 248 bits (134), Expect = 1e-64
Identities = 241/290 (83%), Gaps = 18/290 (6%)
Strand=Plus/Plus
Query 266 AGGAAGCTGCCGTGAGAAAAAAGACGCTCTTTGTTGCCAATCTCAATTACG-A-AACTAA 323
||||| |||||| |||||||||||||||||||||||||||||| | || | ||||||
Sbjct 1725 AGGAATTTGCCGTAAGAAAAAAGACGCTCTTTGTTGCCAATCTC--TCACCCAGAACTAA 1782
Query 324 AATACCAAATATCATCGA-TTTCTTCAAAAAGGTTGGAAGA-GTTGTTCGTGTTCGACTT 381
|||| || |||||||| | ||| || ||| | |||| | || ||||||||||||||||||
Sbjct 1783 AATATCACATATCATCAAGTTTTTT-AAAGATGTTGCA-GAAGTTGTTCGTGTTCGACTT 1840
Query 382 ATTGTAAACCTCAAGGGTAAGCTTGTGGGCTGTGGCTTTGTTGAGTTTGCTTCT-TCTAA 440
|||||||||| || |||| ||| ||||||||||||||||||||||||||||||| | |||
Sbjct 1841 ATTGTAAACCACAGGGGTGAGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGT-TAA 1899
Query 441 AGAAGCAAAGAAGGCGCTGCGAAAGAAGAACGGTGAATATTTGCTC-GATAATAAGATTT 499
|||||| |||||||||||| ||||| ||| |||||| |||||| | | | | ||||||
Sbjct 1900 CGAAGCACAGAAGGCGCTGCAAAAGATGAATGGTGAAAATTTGCGCAG-TCGTGAGATTT 1958
Query 500 TTCTTGATGTGGCTAATAAGAAAGCTACATACC-T-TCC-ACCCAAGTAC 546
||||||| |||| | | || |||| |||||| | ||| ||||||||||
Sbjct 1959 TTCTTGACGTGG-T--TGAGTTAGCTCCATACCCTCTCCGACCCAAGTAC 2005
Score = 141 bits (76), Expect = 2e-32
Identities = 87/92 (95%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 1 ATGGAGACGGTGTTTGC-TTTTGGGTTGTTTTCCGGTGATCGCATCTTCGAATCAGTGGT 59
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 ATGGAGACGGTGTTTGCTTTTTGGGTTGTTTTCCGGTGATCGCATCTTC-AATCAGTGGT 182
Query 60 GGTTTTGGAATGGAGAAAGTTTCATCACCGAG 91
||| ||||||||||||||||||||||| |||
Sbjct 183 GGTAATGGAATGGAGAAAGTTTCATCACGGAG 214
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 569 bits (308), Expect = 2e-161
Identities = 552/663 (83%), Gaps = 43/663 (6%)
Strand=Plus/Plus
Query 540 CAAGTACTGCATAGATCACAAGGTTTGGTACAAAGACTACCGT-AGAGGAGATTGCCTTC 598
|||||| ||||||||| ||| |||||| ||||| ||||||| | | | |||| ||||||
Sbjct 38 CAAGTATTGCATAGATTACACGGTTTGCTACAACGACTACCTTCA-ACGAGAAAGCCTTC 96
Query 599 TGATAGAAGAAGATGAGACACCTCCCGATTTTGATGAGAAAGTACTCTTTGTTTCCAATC 658
|||||||||| ||||||||||| ||||||||| |||| ||||||||| |||| ||||||
Sbjct 97 CGATAGAAGAAAATGAGACACCTTCCGATTTTGTTGAGGAAGTACTCTATGTTGCCAATC 156
Query 659 TCTCTCCCCAAACTAAAATATCAG-ATATCTTCGATTTCTTCAATTATGTTGGAGAAGTT 717
||||||||||||||||||||| | || || || |||||||| ||||||||||||||
Sbjct 157 TCTCTCCCCAAACTAAAATAT-TGCATGTCAAAGAATTCTTCAAAGATGTTGGAGAAGTT 215
Query 718 GTTAGTGTTCGACTTATTGTAAACCATGAGGGTAAGCATGTGGGCTATGGCTTTGTTGAG 777
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 216 GTTAGTGTTCGACTTATTGTAAACC--------AAGCATGTGGGCTATGGCTTTGTTGAC 267
Query 778 TTTGCTTCTGCTAACTTAA-CAAAAAAGGCACTGGAAAACAAGAATGGTGAATATTTGCA 836
||||||||| ||||| || |||| ||||| ||| |||| ||||||||||||||||||||
Sbjct 268 TTTGCTTCTTCTAAC-GAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAATATTTGCA 326
Query 837 CAATCATAAGATTTTTCTTGATGTGGCTAAGAAAGCTCCATACCCTCCACGACCCAAGTA 896
||||| ||||||||||| | |||||||||| ||||||||||||| |||||||||||||
Sbjct 327 TGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTACACGACCCAAGTA 386
Query 897 CAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGAGAAAGCCTTCCGATAGA 956
||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 387 CAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGACAAAACCTTGTGATAGA 446
Query 957 A---GA--AGA--GCAG---AC--AC---------CTCCTGATTTTGTTGAGGCAGTTGG 995
| || ||| |||| | || |||| ||||||||||||||||||
Sbjct 447 ATAAGATGAGACAGCAGTGGAAGGACTTGATGAAACTCCCAATTTTGTTGAGGCAGTTG- 505
Query 996 C-GTAAGTACAAAGACGCTCTTTGTTGCCCATCTCTCTC-GTAAAACTGAAATATC-GCA 1052
| ||||| | |||||||||||||||| ||| |||||||| | || || ||||||| | |
Sbjct 506 CTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGAAG-CTCAAATATCAG-A 563
Query 1053 TATCATAAATTTCTTCAATGATGTTGGAGAAGTTGTTCATGTTCGACTTATTCTAAACCA 1112
|||||| ||||||||||| || |||||| ||||||| ||||||||||||||| || || |
Sbjct 564 TATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTA 623
Query 1113 CAATGGCAAGCATTTGGGCTG-TGGCTTTGTAGAGTTCGGTTCTGCTAACGAAGCAAAGA 1171
|| ||| ||||| ||||| | ||||||||| ||||| | |||||||||||||||| |||
Sbjct 624 CACGGGCGAGCATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGA 682
Query 1172 AGG 1174
|||
Sbjct 683 AGG 685
Score = 270 bits (146), Expect = 3e-71
Identities = 243/287 (85%), Gaps = 18/287 (6%)
Strand=Plus/Plus
Query 1396 CTCTTTATTGCCAATCTCTCTCACAAAACTAAAATATCACATATCATCA-AATTCTTCAA 1454
|||| | ||||||||||||||| | |||||||||||| ||| ||| | ||||||||||
Sbjct 141 CTCTATGTTGCCAATCTCTCTCCCCAAACTAAAATATTGCATGTCA-AAGAATTCTTCAA 199
Query 1455 AGATGTTGGAGAAGTT-TTCCGCGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGG 1513
|||||||||||||||| || | ||||||||||||||||| | || |||||||||
Sbjct 200 AGATGTTGGAGAAGTTGTT-AGTGTTCGACTTATTGTAAA-C-CA------AGCATGTGG 250
Query 1514 GTTGTGGCTTTGTCGAGTTTGCCTCTGCTAATGAAGCAAAGAAGGCGCTGCAAAAGAAGA 1573
| | ||||||||| || ||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 251 GCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGA 310
Query 1574 ATGGTGAAAATTTGC--GCAGTCATAAGATTTTTCTTGACGTGGCTGAGAGAGCTCCATA 1631
|||||||| |||||| | | |||| ||||||||||| | |||||| ||| |||||||||
Sbjct 311 ATGGTGAATATTTGCATG-A-TCATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATA 368
Query 1632 CCCT-CTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGCACGAA 1677
|||| | | ||||||||||||||||||||||||||||||| |||||
Sbjct 369 CCCTACAC-GACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAA 414
Score = 150 bits (81), Expect = 4e-35
Identities = 129/152 (85%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 643 CTCTTTGTTTCCAATCTCTCTCCCCAAACTAAAATATCAGATATCTTCGATTTCTTCAAT 702
|||||||||||| ||||||||| || || |||||||||||||| || ||||||||||
Sbjct 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAA 582
Query 703 TATGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAACCATGA-GGGTAAGCATGTGG 760
| |||||| |||||| || |||||||||||||||| || | | ||| |||||||||
Sbjct 583 GACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTA-CACGGGCGAGCATGTGG 640
Query 761 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC 792
|| |||||||||||||||||||||||||||||
Sbjct 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAAC 672
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 470 bits (254), Expect = 3e-131
Identities = 578/726 (80%), Gaps = 56/726 (8%)
Strand=Plus/Plus
Query 971 CTCCTGATTTTGTTGAGGCAGTTGGCGTAAGTACAAAGACGCTCTTTGTTGCCCATCTCT 1030
|||||| ||||| ||||| || || | | | ||||| ||||||||||||| ||| |||
Sbjct 707 CTCCTGGTTTTGCTGAGGAAGCTGCCAT-A--ACAAAAACGCTCTTTGTTG-CCA-ATCT 761
Query 1031 CTCGT-A--AAACTGAAATATC-GCATATCATAAATTTCTTCAATGATGTTGGAGAAGTT 1086
| ||| | | | | ||||| | ||||||| ||||||||||| |||||||||||||||
Sbjct 762 C-CGTGACTCCATTCAGATATCAG-ATATCATCAATTTCTTCAAAGATGTTGGAGAAGTT 819
Query 1087 GTTCATGTTCGACTTATTCTAAACCA-CAATGGCAAGCATTTGGGCTGTGGCTTTGTAGA 1145
|||||||||||||||||| ||||| | | | || |||||| |||||| || ||||| ||
Sbjct 820 GTTCATGTTCGACTTATTGTAAAC-AGCCAGGGAAAGCATGCGGGCTGGGGTTTTGTTGA 878
Query 1146 GTTCGGTTCTGCTAACGAAGCAAAGAAGGCGTATGA-AAAGAAAAACGGTGAAAATTTGA 1204
||| | |||||||||||||||| |||||||| || |||||| ||||||| |||||
Sbjct 879 GTTTGCTTCTGCTAACGAAGCAGAGAAGGCGC-TGGTAAAGAA---CGGTGAATATTTGC 934
Query 1205 ACGATTGCAAGATTTTTCTTGAAGTG-GCTAAGACAGCTCCAGACCCTCCACCCAAGTAT 1263
|| ||| |||||||| |||||| | | ||||||||||||||| ||| ||||||||||| |
Sbjct 935 ACAATTACAAGATTTCTCTTGACG-GAGCTAAGACAGCTCCACACCGTCCACCCAAGTTT 993
Query 1264 TGCTTAGATCACATGGTTTGGTACGAAGACTACCTTCGACGAGA-ACGCCTTCTGAT-AG 1321
||| ||||||||| ||||||||||||||||||||||||| |||| | ||||||| || |
Sbjct 994 TGCCTAGATCACAAGGTTTGGTACGAAGACTACCTTCGAAGAGAGA-GCCTTCTCATTA- 1051
Query 1322 AAGAAGATGAGACAGTGGAAGGACTTGATGAACCTCCCGTTTTTGTTGAGGAAGCTGCCG 1381
|||||| |||| ||||||||||||||||||| |||| | |||| ||||||||| ||| |
Sbjct 1052 AAGAAGTTGAGGGAGTGGAAGGACTTGATGAAACTCCTGATTTTCTTGAGGAAGTTGCTG 1111
Query 1382 TACTAAAAAATAC-GCTCTTTATTGCCAATCTCTCTCACAAAA--C-TAAAATA-T-C-A 1434
| ||||||||| | | ||| | ||||||||| || |||| | | |||| | | |
Sbjct 1112 CAAGAAAAAATACAGTT-TTTGTCGCCAATCTCCCTTACAACTGTCGTCTAATAGTACCA 1170
Query 1435 -CATATCATCAAATTCTTCAAAGATGTTGGAGAAGTT-TTCCGCGTTCGACTTATTGTAA 1492
| ||||||||| ||||||| |||||||||||| || ||| ||||| ||||||||
Sbjct 1171 AC-TATCATCAATTTCTTCAGTGATGTTGGAGAAATTGTTCATA-TTCGAATTATTGTAG 1228
Query 1493 ACCACAGGGGTGAGCATGTGGGTTGTGGCTTTGTCGAGTTTGCCTCTGCTAATGAAGCAA 1552
|||||| |||||||| |||||| ||||||||||| |||||| ||| | || ||||||
Sbjct 1229 ACCACATGGGTGAGCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCCAACGAAGCAG 1288
Query 1553 AGAAGGCGCTGCAAAAGAAGAATGGTGAAAATTTGCGCAGTCATAAGATTTTTCTTGACG 1612
||||||||||||||||||||| |||| || |||| | | | || ||||
Sbjct 1289 AGAAGGCGCTGCAAAAGAAGACTGGT-AAGATTT-C----T-----G-TT------GACG 1330
Query 1613 TGGCTGAGAGAGCTCCATACCCTCTCCGACCCAAGTACAACCTTGC-AGAGAAGCTTTGG 1671
||||||||| |||| |||||||| | |||||||||||||| |||| | |||||||||||
Sbjct 1331 TGGCTGAGATAGCTTCATACCCTGTTGGACCCAAGTACAACGTTGCTA-AGAAGCTTTGG 1389
Query 1672 CACGAA 1677
|||||
Sbjct 1390 TACGAA 1395
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 455 bits (246), Expect = 7e-127
Identities = 422/505 (84%), Gaps = 20/505 (4%)
Strand=Plus/Plus
Query 689 TCGATTTCTTCAATTATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGAGG 748
|||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 2216 TCGATTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGAGA 2275
Query 749 GTAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACTTAACAAAAAAGGCAC 808
|||||||||||||||||||||||||||||||||||||| || |||| |||| | ||| |
Sbjct 2276 GTAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGC 2335
Query 809 TGGAAAACAAGAATGGTGAATATTTGCACAATCATAAGATTTTTCTTGATGTGGCTAAGA 868
||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 2336 TGGAAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGA 2395
Query 869 AAGCTCCATACCCTCCACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACT 928
|||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2396 CAGCTCCGTACCCTCCACGAATCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACT 2455
Query 929 ACCTTCGACGAGAAAGCCTTCCGATAGAAGAAGA-G---CAG---AC--ACCTCCTGA-- 977
| |||| |||||| ||||||| |||||||||||| | ||| | || | |||
Sbjct 2456 ATCTTCTACGAGATAGCCTTCTGATAGAAGAAGATGAGACAGTGGAAGGACTTGATGAAA 2515
Query 978 -T--T--TTGT-T-GAGGCAGTTGGCGTAAGTACAAA-GACGCTCTTTGTTGCCCATCTC 1029
| | |||| | |||||||||| | |||| | ||| | |||| || |||| ||| ||
Sbjct 2516 CTCCTAGTTGTGTTGAGGCAGTTGCCTTAAG-AGAAAAGGTGCTCATTATTGCGCATGTC 2574
Query 1030 TCTCGTAAAACTGAAATATCGCATATCATAAATTTCTTCAATGATGTTGGAGAAGTTGTT 1089
|||| ||| ||||||| |||||||| |||||||||| |||| |||| ||||||||
Sbjct 2575 CCTCGCCGAACAAAAATATCACATATCATCGATTTCTTCAAAGATGCTGGACAAGTTGTT 2634
Query 1090 CATGTTCGACTTATTCTAAACCACAATGGCAAGCATTTGGGCTGTGGCTTTGTAGAGTTC 1149
|||| ||||||||| || |||| || ||||||| ||| ||| |||||||||| |||||
Sbjct 2635 AATGTCCGACTTATTGTAGACCAAAAGGGCAAGCCTTTTGGCCGTGGCTTTGTTGAGTTT 2694
Query 1150 GGTTCTGCTAACGAAGCAAAGAAGG 1174
||||||| |||||||||||||||
Sbjct 2695 ACTTCTGCTGACGAAGCAAAGAAGG 2719
Score = 357 bits (193), Expect = 2e-97
Identities = 409/511 (80%), Gaps = 23/511 (5%)
Strand=Plus/Plus
Query 1061 ATTTCTTCAATGATGTTGGAGAAGTTGTTCA-TGTTCGACTTATTCTAAACCACAATG-G 1118
||||||||||||||||||||||||||||| | ||||||||||||| ||| || | | | |
Sbjct 2219 ATTTCTTCAATGATGTTGGAGAAGTTGTT-AGTGTTCGACTTATTGTAAGCCCCGA-GAG 2276
Query 1119 CAAGCATTTGGGCTGTGGCTTTGTAGAGTTCGGTTCTGCTAACGAAGCAAAGAAGGCGTA 1178
|||||| |||||| ||||||||| ||||| | |||| || | |||||| | ||||
Sbjct 2277 TAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCG-C 2335
Query 1179 T-GAAAAGAAAAACGGTGAAAATTTGAACGATTGCAAGATTTTTCTTGAAGTGGCTAAGA 1237
| |||||||| || |||||| ||||| ||||| ||||||||||||| ||||||||||
Sbjct 2336 TGGAAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGA 2395
Query 1238 CAGCTCCAG-ACCCTCCAC---CCAAGTA-TTGCTTAG-ATCACATGGTTTGGTACGAAG 1291
||||||| | ||||||||| |||||| ||| | | | | | ||||||||||||
Sbjct 2396 CAGCTCC-GTACCCTCCACGAATCAAGTACAACCTT-GCA-GAGAAGCTTTGGTACGAAG 2452
Query 1292 ACTACCTTCGACGAGA-ACGCCTTCTGATAGAAGAAGATGAGACAGTGGAAGGACTTGAT 1350
|||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 ACTATCTTCTACGAGATA-GCCTTCTGATAGAAGAAGATGAGACAGTGGAAGGACTTGAT 2511
Query 1351 GAACCTCCC-GTTTTTGTTGAGGAAGCTGCCGTACTAAAAAATACGCTCTTTATTGC-CA 1408
||| |||| ||| | ||||||| || |||| || | |||| |||| ||||||| ||
Sbjct 2512 GAAACTCCTAGTTGT-GTTGAGGCAGTTGCCTTAAGAGAAAAGGTGCTCATTATTGCGCA 2570
Query 1409 ATCTCTCTCACAAAACTAAAATATCACATATCATCAAATTCTTCAAAGATGTTGGAGAAG 1468
| || ||| | ||| |||||||||||||||||| | ||||||||||||| |||| |||
Sbjct 2571 -TGTCCCTCGCCGAACAAAAATATCACATATCATCGATTTCTTCAAAGATGCTGGACAAG 2629
Query 1469 TT-TTCCGCGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGGGTTGTGGCTTTGTC 1527
|| || || |||||||||||| |||| | ||| ||| | | || ||||||||||
Sbjct 2630 TTGTTAAT-GTCCGACTTATTGTAGACCAAAAGGGCAAGCCTTTTGGCCGTGGCTTTGTT 2688
Query 1528 GAGTTTGCCTCTGCTAATGAAGCAAAGAAGG 1558
|||||| | |||||| | |||||||||||||
Sbjct 2689 GAGTTTACTTCTGCTGACGAAGCAAAGAAGG 2719
Score = 217 bits (117), Expect = 4e-55
Identities = 198/236 (84%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 1447 TTCTTCAAAGATGTTGGAGAAGTT-TTCCGCGTTCGACTTATTGTAAACCACAG-GGGTG 1504
|||||||| ||||||||||||||| || | |||||||||||||||| || | | | ||
Sbjct 2221 TTCTTCAATGATGTTGGAGAAGTTGTT-AGTGTTCGACTTATTGTAAGCC-CCGAGAGTA 2278
Query 1505 AGCATGTGGGTTGTGGCTTTGTCGAGTTTGCCTCTGC-TAATGAAGCAAAGAAGGCGCTG 1563
|||||||||| | ||||||||| |||||||| ||| | | | |||||| | |||||||
Sbjct 2279 AGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCT-TAGCAAACATGGCGCTG 2337
Query 1564 CAAAAGAAGAATGGTGAAAATTTGCGCAG-TCATAAGATTTTTCTTGACGTGGCTGAGAG 1622
||||||||||||||||| |||||| | | ||||||||||||||||| |||||| |||
Sbjct 2338 GAAAAGAAGAATGGTGAATATTTGCAC-GATCATAAGATTTTTCTTGGTGTGGCTAAGAC 2396
Query 1623 AGCTCCATACCCTCTC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGCACGAA 1677
|||||| ||||||| | ||| |||||||||||||||||||||||||||| |||||
Sbjct 2397 AGCTCCGTACCCTC-CACGAATCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAA 2451
> AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:18112721-18114070 REVERSE LENGTH=570
Length=570
Score = 405 bits (219), Expect = 7e-112
Identities = 349/409 (85%), Gaps = 19/409 (5%)
Strand=Plus/Plus
Query 1283 GGTACGAAGACTACCTTCGACGAGAACGCCTTCTGATAGAAGAAGATGAGACAGTGGAAG 1342
||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 5 GGTACGAAGACTACCTTCGACAAGAAAACCGTCTGATAGAAGAAGATGAGACAGTGGAAG 64
Query 1343 GACTTGATGA-ACCTCCCG-TT----TT-TGTTGAGGAAGCTGCCGTACTAAAAAATACG 1395
|||||||||| || ||||| || || | ||||||||| ||| ||| |||||| |||
Sbjct 65 GACTTGATGAGAC-TCCCGATTCCGATTATCTTGAGGAAGTTGCTGTAAGAAAAAAGACG 123
Query 1396 CTCTTTATTGCCAATCTCTCTCACAAAACTAAAATATCACATATCATCAAATTCTTCAAA 1455
|||||||||||||||||| || |||| | |||| ||||||||||||| ||||||| |
Sbjct 124 CTCTTTATTGCCAATCTCCCTTTGAAAAGTGAAATGCCACATATCATCAATTTCTTCAGA 183
Query 1456 GATGTTGGAGAAGTT-TTCCGCGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGGG 1514
||||||||||||||| || | ||||||||||||||| ||||||||||| ||||||||||
Sbjct 184 GATGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAGACCACAGGGGTAAGCATGTGGG 242
Query 1515 TTGTGGCTTTGTCGAGTTTGCCTCTGCTAATGAAGCAAAGAAGGCGCTGC---AAAAGAA 1571
||||||||||| |||||||| |||||| | ||||||||||||||| || |||||||
Sbjct 243 CTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTGGAAAAGAA 302
Query 1572 GAATGGTGA-AA-ATTTGCGCAGTCATAA-GATTTTTCTTGACGTGGCTGAGAGAGCTCC 1628
||| | | || ||| ||| | || | | | || |||||||||||||||||| ||||||
Sbjct 303 GAACC-TAAGAAGATT-GCGGAATCGTTATG-TTGTTCTTGACGTGGCTGAGATAGCTCC 359
Query 1629 ATACCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGCACGAA 1677
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 ATACCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAA 408
Score = 276 bits (149), Expect = 6e-73
Identities = 271/327 (83%), Gaps = 19/327 (6%)
Strand=Plus/Plus
Query 643 CTCTTTGTTTCCAATCTCTCTCCCCAAACTAAAATATCAGATATCTTCGATTTCTTCA-A 701
|||||| || |||||||| || ||| | |||| || ||||| || ||||||||| |
Sbjct 124 CTCTTTATTGCCAATCTCCCTTTGAAAAGTGAAATGCCACATATCATCAATTTCTTCAGA 183
Query 702 TTATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGA-GGGTAAGCATGTGG 760
||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 184 -GATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCA-CAGGGGTAAGCATGTGG 241
Query 761 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAACTTAA-CAAA-AAAG-G-CACTGGAAAAC 816
||| ||||||||||||||||||||||||| || || |||| || | | | ||||||||
Sbjct 242 GCTGTGGCTTTGTTGAGTTTGCTTCTGCTTAC-AAAGCAAAGAAGGCGCCGCTGGAAAAG 300
Query 817 AAGAATGGT--GAATATTTGCACAATC-ATAAGATTTTTCTTGATGTGGCTAAGAAAGCT 873
||||| | ||| | |||| |||| || | || ||||||| |||||| ||| ||||
Sbjct 301 AAGAA-CCTAAGAAGA-TTGCGGAATCGTTATG-TTGTTCTTGACGTGGCTGAGATAGCT 357
Query 874 CCATACCCTC-CACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCT 932
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 CCATACCCTCTC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCT 416
Query 933 TCGACGA-GAAAGCCTTCCGATAGAAG 958
|||| || ||||||||| ||||||||
Sbjct 417 TCGA-GAAGAAAGCCTTTTGATAGAAG 442
Score = 231 bits (125), Expect = 1e-59
Identities = 288/363 (79%), Gaps = 25/363 (7%)
Strand=Plus/Plus
Query 266 AGGAAGCTGCCGTGAGAAAAAAGACGCTCTTTGTTGCCAATCTCAATTACG-AAACTAAA 324
|||||| ||| || |||||||||||||||||| ||||||||||| || | ||| | ||
Sbjct 98 AGGAAGTTGCTGTAAGAAAAAAGACGCTCTTTATTGCCAATCTCCCTT-TGAAAAGTGAA 156
Query 325 ATACCAAATATCATCGATTTCTTCAAAAAGGTTGGAAG-AGTTGTTCGTGTTCGACTTAT 383
|| ||| |||||||| ||||||||| | | ||||| || ||||||| |||||||||||||
Sbjct 157 ATGCCACATATCATCAATTTCTTCAGAGATGTTGG-AGAAGTTGTTAGTGTTCGACTTAT 215
Query 384 TGTAAACCTCAAGGGTAAGCTTGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTTCTAA-AG 442
|||| ||| || |||||||| ||||||||||||||||||||||||||||||| || | |
Sbjct 216 TGTAGACCACAGGGGTAAGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACA- 274
Query 443 AAGCAAAGAAGGCGCTGC-G-AAA-GAAGAACGGT--GAATATTTGCTCGA-TAATAA-G 495
||||||||||||||| || | ||| ||||||| | ||| ||| || || | | | |
Sbjct 275 AAGCAAAGAAGGCGCCGCTGGAAAAGAAGAACC-TAAGAAGATT-GCG-GAATCGTTATG 331
Query 496 ATTTTTCTTGATGTGGCTAATAAGAAAGCTACATACC-T-TCC-ACCCAAGTACTGCATA 552
|| ||||||| |||||| | || |||| |||||| | ||| |||||||||| | |
Sbjct 332 -TTGTTCTTGACGTGGCTGA---GATAGCTCCATACCCTCTCCGACCCAAGTACAACCTT 387
Query 553 G-ATCACAAGGTTTGGTACAAAGACTACCGTAGAGGAGATTGCCTTCTGATAGAAGAAGA 611
| | | ||| |||||||| ||||||||| | ||| ||| ||||| ||||||||| ||
Sbjct 388 GCAG-AGAAGCTTTGGTACGAAGACTACCTTCGAGAAGAAAGCCTTTTGATAGAAGCTGA 446
Query 612 TGA 614
|||
Sbjct 447 TGA 449
> AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=1272
Length=1272
Score = 274 bits (148), Expect = 2e-72
Identities = 225/261 (86%), Gaps = 10/261 (4%)
Strand=Plus/Plus
Query 605 AAGAAGATGAGACACCT--C-CCGATTTTGATGAGAAAGTACTCTTTGTTTCCAATCTCT 661
||||||||||||||||| | ||||||||| |||| |||| ||||||||| |||||||||
Sbjct 344 AAGAAGATGAGACACCTCCCGCCGATTTTGCTGAGGAAGTTCTCTTTGTTGCCAATCTCT 403
Query 662 CTCCCCAAACTAAAATATCAGATATCTTCGATTTCT-TCAATTATGTTGGAGAAGTTGTT 720
| ||||||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||
Sbjct 404 CCCCCCAAACTAAGATATTAGATATCTTCGGTTTCTGTCAA-GATGTTGGAGAAGTTGTT 462
Query 721 AGTGTTCGACTTATTGTAAACCATGAGGGTAAGCATGTGGGCTATGGCTTTGTTGAGTTT 780
|||||||||||||||| ||||||||||| |||| |||||||| || |||||||||||||
Sbjct 463 AGTGTTCGACTTATTGCAAACCATGAGGACAAGCCTGTGGGCTGTGCCTTTGTTGAGTTT 522
Query 781 GCTT-CTGCTAACTTAA-CAAAAAAGGCACTGGAAAACAAGAATGGTGAATATTTGCACA 838
||| |||| ||| || |||| |||| |||||||||||||||||||||||||| ||
Sbjct 523 -CTTTCTGCCAACG-AAGCAAAGAAGGTGCTGGAAAACAAGAATGGTGAATATTTTCATG 580
Query 839 ATCATAAGATTTTTCTTGATG 859
||||||||| || ||||||
Sbjct 581 GTCATAAGATCATT-TTGATG 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88453360290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5