BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355852
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 804 0.0
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 798 0.0
AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 418 1e-115
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 353 3e-96
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 289 8e-77
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 230 5e-59
> AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670001-16674966 REVERSE LENGTH=2268
Length=2268
Score = 804 bits (435), Expect = 0.0
Identities = 656/762 (86%), Gaps = 18/762 (2%)
Strand=Plus/Plus
Query 294 TAAGCGAAAACCGGAAGATGATTTGGAAACCAAACCC-ATTCTCAAGAAACATAAGGAAA 352
|||||| || ||| || ||| |||||| || ||||| |||||||||| |||||| ||||
Sbjct 463 TAAGCGTAACCCGCAATATGGTTTGGAGGCC-AACCCAATTCTCAAGAGACATAA-GAAA 520
Query 353 TATCCGAGAAGGAGAAGGAGATAACCGAAGGAT-TTGCTGATAGTCTCCACCAGGTCGAG 411
|| | ||| |||||| || || |||| | | ||||| ||||||||| ||| |||
Sbjct 521 -AT-AAACAAGAAGAAGGTGACAA-CGAAAGCTATTGCTTTTAGTCTCCAGCAGAACGAC 577
Query 412 TTGTTGGAGACAAAATCTGATCAGCCTAATTTAATCTCAGTGAAGGAAGCTGCCGTAACA 471
||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| |||| |
Sbjct 578 TTGTTGGTGACAAAGTCTGATCAGGCTAATTTAATCTCAGTCAAGGAAGCTGCAGTAAGA 637
Query 472 AAAAAGACGCTCTTTATTG-AAACTCTCCCTTACGATACTAAAATACCAAATATCATCGA 530
| |||||||||||| ||| || ||||||||| || |||||||||||||||||||||||
Sbjct 638 GAGAAGACGCTCTTTGTTGCCAA-TCTCCCTTATGAAACTAAAATACCAAATATCATCGA 696
Query 531 TTTCTTCAAAAAGGTTGGAGAAGTTGTTCGTGTTCGACTTATTCTAAACCTCAAGGGTAC 590
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 697 TTTCTTCAAAAAGGTTGGAGAAGTTGTTCGTGTTCAACTTATTGTAAACCTCAAGGGTAA 756
Query 591 GCTTGTGGGCTGTGGCTTTGTTGAGTTTGCTTCCTCT-AACGAAGCAGAGGAGGCGCTGC 649
||||||||| ||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct 757 GCTTGTGGGTTGTGGCTTTGTTGAGTTTGCTTC-TGTTAATGAAGCAGAGGAGGCGCTGC 815
Query 650 AAAAGAAGAACGGTGAATATTT-GTGCGGTCATAAGATTGTTCTTGATGTGGCTAATAAG 708
|||||||||||||||||| ||| | | | |||||||| ||||||||||||||||||||
Sbjct 816 AAAAGAAGAACGGTGAATGTTTAGA-CAATAATAAGATTTTTCTTGATGTGGCTAATAAG 874
Query 709 GGAGCTAAATACCTTCCACCCAAGTATTGCATAGATCACAAGCTTTGTTACGAAGATTAC 768
||||| |||||||||||||||||||||||||||||||||| |||| || |||| |||
Sbjct 875 AAAGCTACATACCTTCCACCCAAGTATTGCATAGATCACAAGGTTTGGGACAAAGACTAC 934
Query 769 CTTCGACAAGAAAGCCTTCCGATAGAAGAAGATGAGACACCTCCTGGTTTTGTTGAGAAA 828
| | ||| |||||||| ||| |||||||||||||||| ||||||| || ||||||| ||
Sbjct 935 CGTAGACTAGAAAGCCATCCAATAGAAGAAGATGAGAGACCTCCTAATTCTGTTGAGGAA 994
Query 829 GTACTCTTTGTTGCCAATCTCTCTCCCCAAACTAAAATATCAGATATCAAAGATTTCTGC 888
|||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |
Sbjct 995 GTACTCTTTGTTGCCAATCTTTCTCCTCAAACTAAAATATCAGATATCTTCGATTTCTTC 1054
Query 889 AAA-GATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCACGA-GTGTAAGCATG 946
|| | ||||||||||||||| ||| |||||||||| |||||||| || | |||||||||
Sbjct 1055 AATTG-TGTTGGAGAAGTTGTAAGTATTCGACTTATGGTAAACCATGAAG-GTAAGCATG 1112
Query 947 TTGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACGCAGCGAAGAAGGTGCTGGAAAAGA 1006
| || ||||||||||||||||||||||||||| ||| | | || |||| ||||| || |
Sbjct 1113 TGGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAACAAAAAAGGCACTGGAGAACA 1172
Query 1007 AGAATGGTGAATATTTACACGATCATAAGATTTTG-TTGATG 1047
|||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1173 AGAATGGTGAATATTTGCACGATCATAAGATTTTTATTGATG 1214
Score = 785 bits (425), Expect = 0.0
Identities = 617/710 (87%), Gaps = 12/710 (2%)
Strand=Plus/Plus
Query 1072 TTTGTTGAGACAGTT-GCTGTAAGAAAAAAGACACTCTTTGTTGCCCATCTCTCTCACCA 1130
||||||||| ||||| || ||||| |||||||| |||||||||||||||||||| | | |
Sbjct 1334 TTTGTTGAGGCAGTTGGC-GTAAGGAAAAAGACGCTCTTTGTTGCCCATCTCTCACGCAA 1392
Query 1131 AACTGAAATATCACATATCATCAGTTTCTTCAAAGATATTGGAGAAGTTGTTCATGTTAG 1190
|||||||||| | |||||||| | ||||||||||||| |||||||||||||||||||| |
Sbjct 1393 AACTGAAATAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCG 1452
Query 1191 ACTTATTGTAGACTATGCGGGCAAGCATTTGGGC-GATGGCTTTGTTGAGTTTGCTTCTG 1249
|||||| || || | | ||||||||| ||||| | || |||||| ||||||| |||||
Sbjct 1453 GCTTATTCTAAACCACACAGGCAAGCATGTGGGCTG-TGCCTTTGTAGAGTTTGGTTCTG 1511
Query 1250 CTAACGAAGCAGAGAAGGCGTTGGAAAAGAAGAACGGTGAATATTTGCACGATCGCAAGA 1309
||||||||||| ||| ||||||||||| ||| ||||||||||||||| ||||| ||||||
Sbjct 1512 CTAACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAATATTTGAACGATTGCAAGA 1571
Query 1310 TTTTACTTGATGTGGCTAAGACAGCTCCATACCCTCCACTACCCAAGTATTGCATAGATC 1369
|||| ||||| |||||||||| | |||||||||| | | |||||||||||||||| |||
Sbjct 1572 TTTTTCTTGAAGTGGCTAAGATGGTTCCATACCCT-C-C-ACCCAAGTATTGCATACATC 1628
Query 1370 ACAAGGTTTGGTATGAAGACTACCTTCGACGAGAACGCCTTCTGATAGAAGAAGATGAGG 1429
||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1629 ACAAGGTTTGGTACGAAGACTACCTTCGACGAGAAAGCCTTCTGATAGAAGAAAATGAGA 1688
Query 1430 CAGTGGATGGACTTGATGA-ATCTCCTGATTTTATTGAGGAAGTTGCGGTAAGAAAAAAG 1488
||| ||| ||||||||||| | |||| | | || |||||||| |||| ||||||||||||
Sbjct 1689 CAGAGGAAGGACTTGATGACA-CTCCCGCTCTTGTTGAGGAATTTGCCGTAAGAAAAAAG 1747
Query 1489 ACGCTCTTTTTTGCAAATCTCTTTTACAGAATTAGAATATCAAATATCATCAA-TTTCTT 1547
||||||||| |||| ||||||| ||||| || ||||||| |||||||||| ||| ||
Sbjct 1748 ACGCTCTTTGTTGCCAATCTCTCACCCAGAACTAAAATATCACATATCATCAAGTTT-TT 1806
Query 1548 CAAAGATGTTGGAGAAGTTGTTGGTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGT 1607
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1807 TAAAGATGTTGCAGAAGTTGTTCGTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGT 1866
Query 1608 GTGCTGTGGCTTTGTTGAGTTTTCTTCTGCTGATGAAGCAAAGAAGGCGCTGCAAATGAA 1667
| |||||||||||||||||||| |||||| | | |||||| ||||||||||||||| ||
Sbjct 1867 GGGCTGTGGCTTTGTTGAGTTTGCTTCTGTTAACGAAGCACAGAAGGCGCTGCAAAAGAT 1926
Query 1668 GAATGGTGAAAATTTCCTTGGTCGTTTTATTTTTCTTGACGTGGTTAAGTTAGCTCCATA 1727
||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||
Sbjct 1927 GAATGGTGAAAATTTGCGCAGTCGTGAGATTTTTCTTGACGTGGTTGAGTTAGCTCCATA 1986
Query 1728 CCCAATCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTTCGAA-GAG 1776
||| |||||||||||||||||| ||||||||| |||||| |||| |||
Sbjct 1987 CCCTCTCCGACCCAAGTACAACCATGCAGAGAAACTTTGGCACGAACGAG 2036
Score = 442 bits (239), Expect = 6e-123
Identities = 566/719 (79%), Gaps = 41/719 (6%)
Strand=Plus/Plus
Query 1104 ACTCTTTGTTGCCCATCTCTCTCAC-CAAACTGAAATATCACATATCATCAG-TTTCTTC 1161
||||||||||||| |||| |||| | |||||| |||||||| ||||| || | |||||||
Sbjct 997 ACTCTTTGTTGCCAATCTTTCTC-CTCAAACTAAAATATCAGATATCTTC-GATTTCTTC 1054
Query 1162 AA-AGATATTGGAGAAGTTGTTCA-TGTTAGACTTATTGTAGACTATGCGGGCAAGCATT 1219
|| | | |||||||||||| | | | || ||||||| ||| || ||| || ||||||
Sbjct 1055 AATTG-TGTTGGAGAAGTTG-TAAGTATTCGACTTATGGTAAACCATGAAGGTAAGCATG 1112
Query 1220 TGGGCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGTTGGAAAAGA 1279
|||| |||||||||||||||||||||||||| ||||| || | ||||| |||| || |
Sbjct 1113 TGGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAACAAAAAAGGCACTGGAGAACA 1172
Query 1280 AGAACGGTGAATATTTGCACGATCGCAAGA-TTTTACTTGATGTGGCTAAGACAGCTCCA 1338
|||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 1173 AGAATGGTGAATATTTGCACGATCATAAGATTTTTA-TTGATGTGGCTAAGACAGCTCCA 1231
Query 1339 TACCCTCCACTACCCAAGTATTGCATAG-ATCACAAGGTTTGGTATGAAGACTACCTTCG 1397
||||||||| ||||||||| | | | | | ||| |||| || ||||||||||||||
Sbjct 1232 TACCCTCCAGGACCCAAGTACAACCTTGTAG-AGAAGCTTTGTTACGAAGACTACCTTCG 1290
Query 1398 ACGAGAACGCCTTCTGATAGAAGAAGATGAGGCAGTGGATGGACTTGATGAATCTCCTGA 1457
||||||| |||||| |||||| ||||||||| || | |||||||
Sbjct 1291 ACGAGAAAGCCTTCCGATAGATGAAGATGAGACA---------C---------CTCCTGA 1332
Query 1458 TTTTATTGAGGAAGTTG-CGGTAAGAAAAAAGACGCTCTTTTTTGCAAATCTCTTTTACA 1516
||| |||||| ||||| || |||| ||||||||||||||| |||| |||||| ||
Sbjct 1333 ATTTGTTGAGGCAGTTGGCG-TAAGGAAAAAGACGCTCTTTGTTGCCCATCTCTCACGCA 1391
Query 1517 GAATTAGAA-TATCAAATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTGGTGTT 1575
|| | ||| || | ||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1392 AAACT-GAAATAACGCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTT 1450
Query 1576 CGACTTATTGTAAACCACAGGGGTGAGCATGTGTGCTGTGGCTTTGTTGAGTTTTCTTCT 1635
|| |||||| ||||||||| || |||||||| |||||| |||||| |||||| ||||
Sbjct 1451 CGGCTTATTCTAAACCACACAGGCAAGCATGTGGGCTGTGCCTTTGTAGAGTTTGGTTCT 1510
Query 1636 GCTGATGAAGCAAAGAAGGCGCTGCAAATGAAGAATGGTGAAAATTTCCTTGGTCGTTTT 1695
||| | |||||||||| |||| || ||| ||| || |||||| |||| | | |
Sbjct 1511 GCTAACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAATATTTGAACGATTGCAAG 1570
Query 1696 ATTTTTCTTGACGTGGTTAAGTTAGCTCCATACCCAATCCGACCCAAGTACAACCTTGCA 1755
||||||||||| |||| |||| | | ||||||||| ||| ||||||||| | | ||
Sbjct 1571 ATTTTTCTTGAAGTGGCTAAGATGGTTCCATACCC--TCC-ACCCAAGTATTGCATA-CA 1626
Query 1756 G-AGAAGCTTTGGTTCGAAGAGTACCTTCGACGACAATA-CCTTCTGATAGAAGATAAT 1812
| ||| |||||| |||||| |||||||||||| || | ||||||||||||||| |||
Sbjct 1627 TCACAAGGTTTGGTACGAAGACTACCTTCGACGAGAA-AGCCTTCTGATAGAAGAAAAT 1684
Score = 279 bits (151), Expect = 5e-74
Identities = 288/352 (82%), Gaps = 18/352 (5%)
Strand=Plus/Plus
Query 1086 TGCTGTAAGAAAAAAGACACTCTTTGTTGCCCATCTCTCTCACCAAACTGAAATATCACA 1145
||| |||||| | ||||| |||||||||||| ||||| || | ||||| ||||| || |
Sbjct 628 TGCAGTAAGAGAGAAGACGCTCTTTGTTGCCAATCTCCCTTATGAAACTAAAATACCAAA 687
Query 1146 TATCATCAG-TTTCTTCAAAGATATTGGAGAAGTTGTTCATGTT-AGACTTATTGTAGA- 1202
||||||| | |||||||||| | ||||||||||||||| |||| | |||||||||| |
Sbjct 688 TATCATC-GATTTCTTCAAAAAGGTTGGAGAAGTTGTTCGTGTTCA-ACTTATTGTAAAC 745
Query 1203 CTATGCGGGCAAGCATT-TGGG-CGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCA 1260
|| ||| |||| || |||| | ||||||||||||||||||||||| ||| ||||||
Sbjct 746 CT-CAAGGGTAAGC-TTGTGGGTTG-TGGCTTTGTTGAGTTTGCTTCTGTTAATGAAGCA 802
Query 1261 GAGAAGGCGTTGGAAAAGAAGAACGGTGAATATTT-GCACGATCGCAAGATTTTACTTGA 1319
||| ||||| || |||||||||||||||||| ||| | || || |||||||| |||||
Sbjct 803 GAGGAGGCGCTGCAAAAGAAGAACGGTGAATGTTTAG-ACAATAATAAGATTTTTCTTGA 861
Query 1320 TGTGGC---TAAGACAGCTCCATACCCTCCACTACCCAAGTATTGCATAGATCACAAGGT 1376
|||||| ||||| |||| |||| ||| | | |||||||||||||||||||||||||||
Sbjct 862 TGTGGCTAATAAGAAAGCTACATA-CCTTC-C-ACCCAAGTATTGCATAGATCACAAGGT 918
Query 1377 TTGGTATGAAGACTACCTTCGACGAGAACGCCTTCTGATAGAAGAAGATGAG 1428
|||| | ||||||||| | ||| |||| ||| || |||||||||||||||
Sbjct 919 TTGGGACAAAGACTACCGTAGACTAGAAAGCCATCCAATAGAAGAAGATGAG 970
Score = 230 bits (124), Expect = 5e-59
Identities = 237/289 (82%), Gaps = 18/289 (6%)
Strand=Plus/Plus
Query 455 AGGAAGCTGCCGTAACAAAAAAGACGCTCTTTATTG--AAACTCTC-CCTTACGATACTA 511
||||| |||||||| |||||||||||||||| ||| || ||||| || | || ||||
Sbjct 1725 AGGAATTTGCCGTAAGAAAAAAGACGCTCTTTGTTGCCAATCTCTCACC-CA-GA-ACTA 1781
Query 512 AAATACCAAATATCATCGA-TTTCTTCAAAAAGGTTGGAGAAGTTGTTCGTGTTCGACTT 570
||||| || |||||||| | ||| || ||| | |||| ||||||||||||||||||||||
Sbjct 1782 AAATATCACATATCATCAAGTTT-TTTAAAGATGTTGCAGAAGTTGTTCGTGTTCGACTT 1840
Query 571 ATTCTAAACCTCAAGGGT-ACGCTTGTGGGCTGTGGCTTTGTTGAGTTTGCTTCCTCT-A 628
||| |||||| || |||| | || |||||||||||||||||||||||||||||| | | |
Sbjct 1841 ATTGTAAACCACAGGGGTGA-GCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTC-TGTTA 1898
Query 629 ACGAAGCAGAGGAGGCGCTGCAAAAGAAGAACGGTGAATATTTGTGCGGTCATAAGATTG 688
|||||||| || ||||||||||||||| ||| |||||| ||||| || ||| | |||||
Sbjct 1899 ACGAAGCACAGAAGGCGCTGCAAAAGATGAATGGTGAAAATTTGCGCAGTCGTGAGATTT 1958
Query 689 TTCTTGATGTGGCTAATAAGGGAGCTAAATACC-T-TCC-ACCCAAGTA 734
||||||| |||| | | || |||| ||||| | ||| |||||||||
Sbjct 1959 TTCTTGACGTGG-T--TGAGTTAGCTCCATACCCTCTCCGACCCAAGTA 2004
Score = 69.4 bits (37), Expect = 1e-10
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1866 ATTCTGCGGTAAGAAGATTATCTTCTCTTACGACGAC 1902
|||||||||||||||||||||||||||||||||||||
Sbjct 2089 ATTCTGCGGTAAGAAGATTATCTTCTCTTACGACGAC 2125
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 798 bits (432), Expect = 0.0
Identities = 841/1028 (82%), Gaps = 70/1028 (7%)
Strand=Plus/Plus
Query 797 AAGATGAGACACCTCCTGGTTTTGTTGA-GAAAGTACTCTTTGTTGCCAATCTCTCTCCC 855
|||||||||||||||||| ||||||||| | ||||| || ||||| ||||||||||||||
Sbjct 443 AAGATGAGACACCTCCTGATTTTGTTGACG-AAGTAGTCATTGTTTCCAATCTCTCTCCC 501
Query 856 CAAACTAAAATATCAGATATCAAAGATTTCTGCAAAGATGTTGGAGAAGTTGTTAGTGTT 915
| |||||||||| || ||||||||| ||||| ||| | ||||| | |||||||||| |||
Sbjct 502 CTAACTAAAATAGCACATATCAAAGGTTTCTTCAATGGTGTTGCACAAGTTGTTAGCGTT 561
Query 916 CGACTTATTGTAAACCACGAGTGTAAGCATGTTGGCTATGGCTTTGTTGAGTTTGCTTCT 975
|||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 562 CGACTTGTTGTAAACCACGAGGGTAAGCATGTGGGCTATGGATTTGTTGAGTTTGCTTCT 621
Query 976 GCTAACGCAGCGAAGAAGG-TGCTGGAAAAGAAGAATGGTGAATATTTACACGATCATAA 1034
||| ||| ||| || |||| | |||||| |||| |||||||||||| | ||| |||||||
Sbjct 622 GCTTACGGAGCAAACAAGGCT-CTGGAAGAGAAAAATGGTGAATATCTGCACAATCATAA 680
Query 1035 GATTTTGTTGATGAAAGGACTTGATGAATCTCCCAATTTTGTTGA-GACAGTTGCTGTAA 1093
|||| ||||||||||||||| |||||||||| ||||| ||| || || ||| | |
Sbjct 681 GATTCTGTTGATGAAAGGAC---ATGAATCTCCTGGTTTTGCTGAGGA-AGCTGCCAT-A 735
Query 1094 GAAAAAAGACACTCTTTGTTGCCCATCTCTC-TCAC-CAAACTGAAATATCACATATCAT 1151
| |||| || |||||||||||| ||||| | | || | | | | |||||| |||||||
Sbjct 736 -ACAAAA-ACGCTCTTTGTTGCCAATCTC-CGTGACTC-CATTCAGATATCAGATATCAT 791
Query 1152 CAGTTTCTTCAAAGATATTGGAGAAGTTGTTCATGTTAGACTTATTGTAGACTATG-C-G 1209
|| ||||||||||||| |||||||||||||||||||| ||||||||||| || | | | |
Sbjct 792 CAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGACTTATTGTAAAC-A-GCCAG 849
Query 1210 GGCAAGCATTTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGC 1268
|| |||||| |||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 850 GGAAAGCATGCGGGCTG-GGGTTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGC 908
Query 1269 GTTGGAAAAGAAGAACGGTGAATATTTGCACGATCGCAAGATTT-TACTTGATGTG-GCT 1326
| ||| |||||| |||||||||||||||| || |||||||| | ||||| | | |||
Sbjct 909 GCTGGTAAAGAA---CGGTGAATATTTGCACAATTACAAGATTTCT-CTTGACG-GAGCT 963
Query 1327 AAGACAGCTCCATACCCTCCACTACCCAAGTATTGCATAGATCACAAGGTTTGGTATGAA 1386
|||||||||||| ||| ||||| || |||| |||| ||||||||||||||||||| |||
Sbjct 964 AAGACAGCTCCACACCGTCCAC--CC-AAGTTTTGCCTAGATCACAAGGTTTGGTACGAA 1020
Query 1387 GACTACCTTCGACGAGA-ACGCCTTCTGAT-AGAAGAAGATGAGGCAGTGGATGGACTTG 1444
|||||||||||| |||| | ||||||| || | |||||| ||||| |||||| |||||||
Sbjct 1021 GACTACCTTCGAAGAGAGA-GCCTTCTCATTA-AAGAAGTTGAGGGAGTGGAAGGACTTG 1078
Query 1445 ATGAATCTCCTGATTTTATTGAGGAAGTTGCGGTAAGAAAAAAGAC-GCTCTTTTTT-GC 1502
||||| ||||||||||| ||||||||||||| | ||||||||| || | | |||| | ||
Sbjct 1079 ATGAAACTCCTGATTTTCTTGAGGAAGTTGCTGCAAGAAAAAATACAG-T-TTTTGTCGC 1136
Query 1503 AAATCTCTTTTACAGAAT-TAG---AATA-T-CAAA-TATCATCAATTTCTTCAAAGATG 1555
|||||| ||||| | | | | |||| | | || ||||||||||||||||| ||||
Sbjct 1137 CAATCTCCCTTACA-ACTGTCGTCTAATAGTACCAACTATCATCAATTTCTTCAGTGATG 1195
Query 1556 TTGGAGAAGTTGTTGGTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGTGCTGTG 1615
|||||||| ||||| | ||||| |||||||| |||||| |||||||| |||| ||||||
Sbjct 1196 TTGGAGAAATTGTTCATATTCGAATTATTGTAGACCACATGGGTGAGCCTGTGGGCTGTG 1255
Query 1616 GCTTTGTTGAGTTTTCTTCTGCTGATGAAGCAAAGAAGGCGCTGCAAATGAAGAATGGTG 1675
||||||| |||||| |||| | | |||||| ||||||||||||||| ||||| ||||
Sbjct 1256 GCTTTGTGGAGTTTAATTCTTCCAACGAAGCAGAGAAGGCGCTGCAAAAGAAGACTGGT- 1314
Query 1676 AAAATTTCCTTGGTCGTTTTATTTTTCTTGACGTGGTTAAGTTAGCTCCATACCCAATCC 1735
|| ||||| | | | | ||||||| | || ||||| ||||||| |
Sbjct 1315 AAGATTTC-T-G-T--T------------GACGTGGCTGAGATAGCTTCATACCCTGTTG 1357
Query 1736 GACCCAAGTACAACCTTGC-AGAGAAGCTTTGGTTCGAAGAGTACCTTCGACGAC-AATA 1793
|||||||||||||| |||| | |||||||||||| |||||| ||||||||||| |||
Sbjct 1358 GACCCAAGTACAACGTTGCTA-AGAAGCTTTGGTACGAAGACAACCTTCGACGAGGAATG 1416
Query 1794 CCTTCTGA 1801
| ||||||
Sbjct 1417 C-TTCTGA 1423
Score = 191 bits (103), Expect = 2e-47
Identities = 197/241 (82%), Gaps = 12/241 (5%)
Strand=Plus/Plus
Query 1445 ATGAATCTCCTGATTTTATTGAGGAAGTTGCGGTAAGAAAAAAGACGCTCTTTTTTGCAA 1504
|||||||||||| |||| |||||||| ||| | | | |||| ||||||||| |||| |
Sbjct 701 ATGAATCTCCTGGTTTTGCTGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCCA 757
Query 1505 ATCTCTTTTACAGAATT-AGAATATCAAATATCATCAATTTCTTCAAAGATGTTGGAGAA 1563
||||| | || ||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 758 ATCTCCGTGACTCCATTCAG-ATATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAA 816
Query 1564 GTTGTTGGTGTTCGACTTATTGTAAACCA-C-AGGGGTGAGCATGTGTGCTGTGGCTTTG 1621
|||||| ||||||||||||||||||| | | |||| |||||| | |||| || ||||
Sbjct 817 GTTGTTCATGTTCGACTTATTGTAAAC-AGCCAGGGAA-AGCATGCGGGCTGGGGTTTTG 874
Query 1622 TTGAGTTTTCTTCTGCTGATGAAGCAAAGAAGGCGCTGCAAATGAAGAATGGTGAAAATT 1681
|||||||| |||||||| | |||||| ||||||||||| || | ||| |||||| |||
Sbjct 875 TTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAA--A-GAACGGTGAATATT 931
Query 1682 T 1682
|
Sbjct 932 T 932
> AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:18112721-18114070 REVERSE LENGTH=570
Length=570
Score = 418 bits (226), Expect = 1e-115
Identities = 402/482 (83%), Gaps = 32/482 (7%)
Strand=Plus/Plus
Query 1379 GGTATGAAGACTACCTTCGACGAGAACGCCTTCTGATAGAAGAAGATGAGGCAGTGGATG 1438
|||| |||||||||||||||| |||| || ||||||||||||||||||| ||||||| |
Sbjct 5 GGTACGAAGACTACCTTCGACAAGAAAACCGTCTGATAGAAGAAGATGAGACAGTGGAAG 64
Query 1439 GACTTGATGA-ATCTCCTGATT----TTA--TTGAGGAAGTTGCGGTAAGAAAAAAGACG 1491
|||||||||| | |||| |||| ||| ||||||||||||| |||||||||||||||
Sbjct 65 GACTTGATGAGA-CTCCCGATTCCGATTATCTTGAGGAAGTTGCTGTAAGAAAAAAGACG 123
Query 1492 CTCTTTTTTGCAAATCT--CTTTTACAGAA-TTAGAATATCAAATATCATCAATTTCTTC 1548
|||||| |||| ||||| |||| | | || | | ||| || |||||||||||||||||
Sbjct 124 CTCTTTATTGCCAATCTCCCTTTGA-A-AAGTGA-AATGCCACATATCATCAATTTCTTC 180
Query 1549 AAAGATGTTGGAGAAGTTGTTGGTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTG 1608
| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 181 AGAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCACAGGGGTAAGCATGTG 240
Query 1609 TGCTGTGGCTTTGTTGAGTTTTCTTCTGCTGATGAAGCAAAGAA-G-G-CGCTGCAAATG 1665
|||||||||||||||||||| |||||||| | |||||||||| | | ||||| ||| |
Sbjct 241 GGCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTGGAAAAG 300
Query 1666 AAGAATGGTGAA-AA-TTTCCTTGG--TCGTTTTATTTTTCTTGACGTGGTTAAGTTAGC 1721
||||| | || || || | || ||||| | || |||||||||||| | || ||||
Sbjct 301 AAGAA-CCT-AAGAAGATTGC--GGAATCGTTATGTTGTTCTTGACGTGGCTGAGATAGC 356
Query 1722 TCCATACCCAATCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTTCGAAGAGTACCT 1781
||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 357 TCCATACCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCT 416
Query 1782 TCGACGAC-AATA-CCTTCTGATAGAAGAT-A--ATTTGGAGACCAAACCGAATAAGAAG 1836
|||| || || | |||| ||||||||| | | ||||||||| ||||| ||| || |||
Sbjct 417 TCGA-GAAGAA-AGCCTTTTGATAGAAGCTGATGATTTGGAGAACAAACAGAAGAAAAAG 474
Query 1837 AA 1838
||
Sbjct 475 AA 476
Score = 220 bits (119), Expect = 3e-56
Identities = 287/364 (79%), Gaps = 27/364 (7%)
Strand=Plus/Plus
Query 455 AGGAAGCTGCCGTAACAAAAAAGACGCTCTTTATTG-AAACTCTCCCTTACG-ATACTAA 512
|||||| ||| |||| |||||||||||||||||||| || |||||||| | | | | |
Sbjct 98 AGGAAGTTGCTGTAAGAAAAAAGACGCTCTTTATTGCCAA-TCTCCCTT-TGAAAAGTGA 155
Query 513 AATACCAAATATCATCGATTTCTTCAAAAAGGTTGGAGAAGTTGTTCGTGTTCGACTTAT 572
||| ||| |||||||| ||||||||| | | ||||||||||||||| |||||||||||||
Sbjct 156 AATGCCACATATCATCAATTTCTTCAGAGATGTTGGAGAAGTTGTTAGTGTTCGACTTAT 215
Query 573 TCTAAACCTCAAGGGTACGCTTGTGGGCTGTGGCTTTGTTGAGTTTGCTTCCT-CTAACG 631
| || ||| || ||||| || |||||||||||||||||||||||||||||| | || ||
Sbjct 216 TGTAGACCACAGGGGTAAGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTC-TGCTTACA 274
Query 632 AAGCAGAGGAGGCGCTGC---AAAAGAAGAACGGT--GAATATTTGTGCGG--TCATAA- 683
||||| || |||||| || ||||||||||| | ||| ||| | ||| || | |
Sbjct 275 AAGCAAAGAAGGCGCCGCTGGAAAAGAAGAACC-TAAGAAGATT-G--CGGAATCGTTAT 330
Query 684 GATTGTTCTTGATGTGGCTAATAAGGGAGCTAAATACC-T-TCC-ACCCAAGTATTGCAT 740
| |||||||||| |||||| | | |||| ||||| | ||| ||||||||| | |
Sbjct 331 G-TTGTTCTTGACGTGGCTGAGAT---AGCTCCATACCCTCTCCGACCCAAGTACAACCT 386
Query 741 AG-ATCACAAGCTTTGTTACGAAGATTACCTTCGACAAGAAAGCCTTCCGATAGAAGAAG 799
| | | |||||||| |||||||| ||||||||| ||||||||||| |||||||| |
Sbjct 387 TGCAG-AGAAGCTTTGGTACGAAGACTACCTTCGAGAAGAAAGCCTTTTGATAGAAGCTG 445
Query 800 ATGA 803
||||
Sbjct 446 ATGA 449
Score = 167 bits (90), Expect = 4e-40
Identities = 154/184 (84%), Gaps = 7/184 (4%)
Strand=Plus/Plus
Query 832 CTCTTTGTTGCCAATCTCTCTCCCCAAACTAAAATATCAGATATCA-AAGATTTCTGCAA 890
|||||| ||||||||||| || ||| | |||| || |||||| | |||||| ||
Sbjct 124 CTCTTTATTGCCAATCTCCCTTTGAAAAGTGAAATGCCACATATCATCA-ATTTCTTCAG 182
Query 891 AGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCACGA-GTGTAAGCATGTTG 949
||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||| |
Sbjct 183 AGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCAC-AGGGGTAAGCATGTGG 241
Query 950 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAACGCAGCGAAGAAGGTGC---TGGAAAAGA 1006
||| ||||||||||||||||||||||||| || ||| ||||||| || |||||||||
Sbjct 242 GCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTGGAAAAGA 301
Query 1007 AGAA 1010
||||
Sbjct 302 AGAA 305
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 353 bits (191), Expect = 3e-96
Identities = 276/315 (88%), Gaps = 14/315 (4%)
Strand=Plus/Plus
Query 729 CAAGTATTGCATAGATCACAAGCTTTGTTACGAA-GATTACCTTCGACAAGAAAGCCTTC 787
|||||||||||||||| ||| | |||| ||| || || ||||||| || |||||||||||
Sbjct 38 CAAGTATTGCATAGATTACACGGTTTGCTAC-AACGACTACCTTCAACGAGAAAGCCTTC 96
Query 788 CGATAGAAGAAGATGAGACACC-TCCTGGTTTTGTTGAGAAAGTACTCTTTGTTGCCAAT 846
||||||||||| |||||||||| ||| | |||||||||| ||||||||| ||||||||||
Sbjct 97 CGATAGAAGAAAATGAGACACCTTCC-GATTTTGTTGAGGAAGTACTCTATGTTGCCAAT 155
Query 847 CTCTCTCCCCAAACTAAAATATCAG-ATATCAAAGATTTCTGCAAAGATGTTGGAGAAGT 905
|||||||||||||||||||||| | || ||||||| |||| ||||||||||||||||||
Sbjct 156 CTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAGAATTCTTCAAAGATGTTGGAGAAGT 214
Query 906 TGTTAGTGTTCGACTTATTGTAAACCACGAGTGTAAGCATGTTGGCTATGGCTTTGTTGA 965
||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 215 TGTTAGTGTTCGACTTATTGTAAACCA--AG------CATGTGGGCTATGGCTTTGTTGA 266
Query 966 GTTTGCTTCTGCTAACGCAGCGAAGAAGGTGCTGGAAAAGAAGAATGGTGAATATTTACA 1025
||||||||| |||||| ||| ||||||| |||| |||||||||||||||||||||| ||
Sbjct 267 CTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAATATTTGCA 326
Query 1026 CGATCATAAGATTTT 1040
|||||| |||||||
Sbjct 327 TGATCATCAGATTTT 341
Score = 289 bits (156), Expect = 8e-77
Identities = 199/220 (90%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 1049 AAGGACTTGATGAATCTCCCAATTTTGTTGAGACAGTTGCTGTAAGAAAAAAGACACTCT 1108
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 467 AAGGACTTGATGAAACTCCCAATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCT 526
Query 1109 TTGTTGCCCATCTCTCTCAC-CAAACTGAAATATCACATATCATCAGTTTCTTCAAAGAT 1167
||||| ||| |||||||| | || || |||||||| ||||||||| ||||||||||||
Sbjct 527 TTGTTTCCCGTCTCTCTC-CGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAAGAC 585
Query 1168 ATTGGAGAAGTTGTTCATGTTAGACTTATTGTAGACTATGCGGGCAAGCATTTGGGCGAT 1227
||||| ||||||| |||||| |||||||||||||||| ||||| ||||| ||||||||
Sbjct 586 GTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTACACGGGCGAGCATGTGGGCGAT 645
Query 1228 GGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 1267
||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685
Score = 270 bits (146), Expect = 3e-71
Identities = 228/266 (86%), Gaps = 12/266 (5%)
Strand=Plus/Plus
Query 1543 TTCTTCAAAGATGTTGGAGAAGTTGTTGGTGTTCGACTTATTGTAAACCACAGGGGTGAG 1602
||||||||||||||||||||||||||| ||||||||||||||||||| | || ||
Sbjct 192 TTCTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAA-C-CA------AG 243
Query 1603 CATGTGTGCTGTGGCTTTGTTGAGTTTTCTTCTGCTGATGAAGCAAAGAAGGCGCTGCAA 1662
|||||| ||| |||||||||||| ||| ||||| || | |||||||||||||||||||||
Sbjct 244 CATGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAA 303
Query 1663 ATGAAGAATGGTGAAAATTTCCTTGGTCGTTTTATTTTTCTTGACGTGGTTAAGTTAGCT 1722
| ||||||||||||| |||| | || || | ||||||||| | |||| |||| ||||
Sbjct 304 AAGAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCT 363
Query 1723 CCATACCCAATC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTT-CGAAGAGTACC 1780
|||||||| | | |||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 364 CCATACCCTA-CACGACCCAAGTACAACCTTGCAGAGAAGCTTTG-TTACGAAGACTACC 421
Query 1781 TTCGACGACAATACCTTCTGATAGAA 1806
||||||||||| ||||| ||||||||
Sbjct 422 TTCGACGACAAAACCTTGTGATAGAA 447
Score = 148 bits (80), Expect = 1e-34
Identities = 141/169 (83%), Gaps = 10/169 (6%)
Strand=Plus/Plus
Query 832 CTCTTTGTTGCCAATCTCTCTCCCCAAACTAAAATATCAGATATCA-AAGATTTCTGCAA 890
||||||||| || ||||||||| || || ||||||||||||||| | |||||| |||
Sbjct 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCA-ATTTCTTCAA 581
Query 891 AGATGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAAC--CACGAGTGTAAGCATGT 947
||| |||||| |||||| || |||||||||||||||| || |||| | | |||||||
Sbjct 582 AGACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTACACG-G-GCGAGCATGT 638
Query 948 TGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACGCAGC-GAAGAAGGT 995
||| |||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 639 GGGCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGA-GAAGGT 686
> AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=1272
Length=1272
Score = 289 bits (156), Expect = 8e-77
Identities = 250/294 (85%), Gaps = 11/294 (4%)
Strand=Plus/Plus
Query 794 AAGAAGATGAGACACCTCCTG--G-TTTTGTTGAGAAAGTACTCTTTGTTGCCAATCTCT 850
||||||||||||||||||| | | ||||| |||| |||| |||||||||||||||||||
Sbjct 344 AAGAAGATGAGACACCTCCCGCCGATTTTGCTGAGGAAGTTCTCTTTGTTGCCAATCTCT 403
Query 851 CTCCCCAAACTAAAATATCAGATATCAAAGATTTCTG-CAAAGATGTTGGAGAAGTTGTT 909
| ||||||||||| |||| ||||||| | |||||| | ||||||||||||||||||||
Sbjct 404 CCCCCCAAACTAAGATATTAGATATCTTCGGTTTCTGTC-AAGATGTTGGAGAAGTTGTT 462
Query 910 AGTGTTCGACTTATTGTAAACCACGAGTGT-AAGCATGTTGGCTATGGCTTTGTTGAGTT 968
|||||||||||||||| |||||| ||| | |||| ||| |||| || ||||||||||||
Sbjct 463 AGTGTTCGACTTATTGCAAACCATGAG-GACAAGCCTGTGGGCTGTGCCTTTGTTGAGTT 521
Query 969 TGCTT-CTGCTAACGCAGCGAAGAAGGTGCTGGAAAAGAAGAATGGTGAATATTTACACG 1027
| ||| |||| |||| ||| ||||||||||||||||| ||||||||||||||||| || |
Sbjct 522 T-CTTTCTGCCAACGAAGCAAAGAAGGTGCTGGAAAACAAGAATGGTGAATATTTTCATG 580
Query 1028 ATCATAAGATT-TTGTTGATGAAAGGACTTGATGAATCTCCCAATTTTGTTGAG 1080
||||||||| || ||||||| ||||| || |||| ||||| |||| | ||||
Sbjct 581 GTCATAAGATCATT-TTGATGAGAGGACATGGTGAAACTCCCGATTTCGCTGAG 633
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 230 bits (124), Expect = 5e-59
Identities = 225/273 (82%), Gaps = 10/273 (4%)
Strand=Plus/Plus
Query 1541 ATTTCTTCAAAGATGTTGGAGAAGTTGTTGGTGTTCGACTTATTGTAAACCACAG-GGGT 1599
|||||||||| |||||||||||||||||| |||||||||||||||||| || | | | ||
Sbjct 2219 ATTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCC-CCGAGAGT 2277
Query 1600 GAGCATGTGTGCTGTGGCTTTGTTGAGTTTTCTTCTGC-TGATGAAGCAAAGAAGGCGCT 1658
|||||||| ||| |||||||||||||||| ||||| | || | |||||| | ||||||
Sbjct 2278 AAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCT-TAGCAAACATGGCGCT 2336
Query 1659 GCAAATGAAGAATGGTGAAAATTTCCTTGGTCGTTTTATTTTTCTTGACGTGGTTAAGTT 1718
| ||| ||||||||||||| |||| | | || | |||||||||| |||| ||||
Sbjct 2337 GGAAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGAC 2396
Query 1719 AGCTCCATACCCAAT-C-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTTCGAAGAG 1776
|||||| ||||| | | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2397 AGCTCCGTACCC--TCCACGAATCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGAC 2454
Query 1777 TACCTTCGACGACAATA-CCTTCTGATAGAAGA 1808
|| |||| |||| | || |||||||||||||||
Sbjct 2455 TATCTTCTACGAGA-TAGCCTTCTGATAGAAGA 2486
Score = 209 bits (113), Expect = 7e-53
Identities = 145/161 (90%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 880 GATTTCTGCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCACGAGTGT 939
||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 2218 GATTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGAGAGT 2277
Query 940 AAGCATGTTGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACGCAGCGAAGAAGGTGCTG 999
|||||||| ||||||||||||||||||||||||||| || | ||| || | || ||||
Sbjct 2278 AAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTG 2337
Query 1000 GAAAAGAAGAATGGTGAATATTTACACGATCATAAGATTTT 1040
||||||||||||||||||||||| |||||||||||||||||
Sbjct 2338 GAAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTT 2378
Score = 76.8 bits (41), Expect = 7e-13
Identities = 112/143 (78%), Gaps = 17/143 (12%)
Strand=Plus/Plus
Query 294 TAAGCGAAAACCGGAAGATGATTTGGAAACCAAACCCATTCTCAAGAAACATAAGG-AAA 352
||||||| | || |||||||||||||| |||||||| ||||| ||||||||||||| |||
Sbjct 1575 TAAGCGAGAGCCAGAAGATGATTTGGAGACCAAACCGATTCTGAAGAAACATAAGGAAAA 1634
Query 353 TATCCGAGAAGGAGAAGGAGATAACCGAAGGATTTGCTGATAGTCTCCACCAGGTCGAGT 412
| ||| | | | | ||||| || | ||||| || ||| | | ||||||||
Sbjct 1635 T-TCC--G-A-G-G-AGGAG--AA-C-AAGGA---GCAGAT-CAAAGGAAC-GGTCGAGT 1678
Query 413 TGTTGGAGACAAAATCTGATCAG 435
|||||||||||||||||||||||
Sbjct 1679 TGTTGGAGACAAAATCTGATCAG 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5