BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355871

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41050.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   785    0.0  


> AT5G41050.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr5:16433317-16434318 REVERSE LENGTH=922
Length=922

 Score =  785 bits (425),  Expect = 0.0
 Identities = 483/512 (94%), Gaps = 0/512 (0%)
 Strand=Plus/Plus

Query  8    AGAAACTGATAATGTTTCTGTTACTTCTGCAACTTCTGTCCTTAAACACTCTGTCTCTGA  67
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  250  AGAAACTGATAATGCTTCTGTTACTTCTGCAACTTCTGTCCTTAAACTCTCTGTCTCTGA  309

Query  68   AACATTCTTCAGCTAAACCAAATGCAAAGATCACTGTAATGGGTCTTGTTTACTGCGACA  127
            ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct  310  AACATTCTTCAGCCAAACCAAATGGAAAGATCACTGTAATGGGTCTTGTTTACTGCGACG  369

Query  128  TCTGCTCCAACAACAGTTTCTCCAAACATAGCTACTTCATTCCCGGTGTGGAAGTGAGAA  187
            ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct  370  TCTGCTCCAACAACAGTTTCTCCAATCACAGCTATTTCATTCCCGGTGTGGAAGTGAGAA  429

Query  188  TAATCTGCAGATTCAATTCAGCTTCGTCGAGAACTAGAGAGATGATAACGTTCTCTGCAA  247
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  430  TAATCTGCAGATTCAATTCAGCTTCATCGAGAACTAGAGAGATGATTACGTTCTCTGCAA  489

Query  248  ATCGAACCACAAATGAGCTTGGACTCTACAAGCTAGACATAACATCTTTGGAAGGCGTTG  307
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  490  ATCGAACCACAAATGAGCTTGGACTCTACAAGCTAGACATAACGTCTCTGGAAGGCGTTG  549

Query  308  CTTGCGCTGCAGAAGCAAAGAAAGATTCTCTAATGGCTTCTTGTCAGGCAAGCTTGATTG  367
            ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct  550  CTTGCGCCGCTGAAGCAAAGAAAGATTCTCTAATGGCTTCCTGTCAAGCAAGCTTGATCG  609

Query  368  GTAGCTCCAAAGATTCTTGCAACGTTCCTGGCTTTAGAACTACAACGGATCAGGTTGTGT  427
            |||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct  610  GTAGGTCCAAAGATTCCTGCAACGTTCCTGGCTTCAGAACTACAACGGAGCAGGTTGTGT  669

Query  428  TTAAGTCCAAGAGGTCGAATCTCTGTGTCTATGGGTTTACAGCTTTAAATTTTAGACCCT  487
            ||||||||||||  || ||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct  670  TTAAGTCCAAGATATCTAATCTCTGTGTCTATGGGTTTACTGCTTTAAATTTCAGACCTT  729

Query  488  TACAGAAGAATCTTCACTTGTGTGGCAAGTAA  519
            || ||||||||||||| |||||||||||||||
Sbjct  730  TAGAGAAGAATCTTCATTTGTGTGGCAAGTAA  761



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5