BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355876

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59290.1 | Symbols:  | ENTH/VHS family protein | chr3:219116...   111    5e-24


> AT3G59290.1 | Symbols:  | ENTH/VHS family protein | chr3:21911601-21917844 
FORWARD LENGTH=3690
Length=3690

 Score =  111 bits (60),  Expect = 5e-24
 Identities = 70/75 (93%), Gaps = 0/75 (0%)
 Strand=Plus/Plus

Query  448  GTTCTAGATGCTACCAGCAATGAGTCCTGGGGTCCGAATGGATCACTTCTTGTGGACATT  507
            |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  333  GTTCTAGATGCTACCAGCAATGAGTCCTGGGGTCCGCATGGATCACTTCTTGCGGACATT  392

Query  508  GCGTATGCTTGGAGA  522
            ||  |||||| ||||
Sbjct  393  GCACATGCTTCGAGA  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5