BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355882

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40930.1 | Symbols: TOM20-4 | translocase of outer membrane ...   556    6e-158


> AT5G40930.1 | Symbols: TOM20-4 | translocase of outer membrane 
20-4 | chr5:16404457-16406002 FORWARD LENGTH=807
Length=807

 Score =  556 bits (301),  Expect = 6e-158
 Identities = 379/415 (91%), Gaps = 12/415 (3%)
 Strand=Plus/Plus

Query  1    ATGGATATGCAGAATAAAAACGAGAGATTGATGGTCTTCGAACATGCTCGTC-AAGTATC  59
            ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |
Sbjct  67   ATGGATATGCAGAATGAAAACGAGAGATTGATGGTCTTCGAACATGCTCG-CAAAGTAGC  125

Query  60   AGAAGCAACCTACGTCAAAAACCCCTTAGATGCCGATAATTTGACGAGATGGGCAGGAGC  119
            |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  126  AGAAGCAACCTACGTCAAAAACCCTTTAGATGCCGAGAATTTGACGAGATGGGCAGGAGC  185

Query  120  TTTA-TTGGAACTATCACAGTTTCAGAAACCCTCAGAGTCAAAGCAGATGATTCAAGAGG  178
            |||| || ||||||||||||||||||  |    ||||| ||||||||||||||| |||||
Sbjct  186  TTTACTT-GAACTATCACAGTTTCAG--A----CAGAGCCAAAGCAGATGATTCTAGAGG  238

Query  179  CCATTTCGAGGCTGGGAGAGGCGTTGTTAATCGATCCAAAGAAGCATGATGCTCTTTGGT  238
            | |||| || |||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct  239  CTATTTTGAAGCTGGGAGAGGCCTTGGTCATCGATCCAAAGAAGCATGATGCTCTTTGGT  298

Query  239  TAATTGGGAATGCTCATATTTCATATGCGTTTTTGAATCCTGATCAGACAGAAGCTAGAG  298
            ||||||||||||||||| |||||| || |||||||| | ||||||||||||||||||| |
Sbjct  299  TAATTGGGAATGCTCATCTTTCATTTGGGTTTTTGAGTTCTGATCAGACAGAAGCTAGCG  358

Query  299  ATAACTTTGAGAAAGCTTCTCAGTTCTTTCAACTAGCTGTGGAGGAGCAACCGGATAACG  358
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct  359  ATAACTTTGAGAAAGCTTCTCAGTTCTTTCAACTTGCTGTGGAGGAGCAACCAGAGAGCG  418

Query  359  AACTCTATCGGAAATCAGTGGA-ATTGGCTTCCAAGGGTCCAGAACTACATACAG  412
            ||||||||||||||||| || | |||||||||||||| |||||||||||||||||
Sbjct  419  AACTCTATCGGAAATCATTG-ACATTGGCTTCCAAGGCTCCAGAACTACATACAG  472


 Score =  252 bits (136),  Expect = 3e-66
 Identities = 152/160 (95%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  447  AGGCGGCACCGCTGGACCATCATCTACCAGTGCAAAGACGATGAAGCaaaaaaaGAACAG  506
            |||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||
Sbjct  471  AGGCGGCACCGCTGGACCATCATCTAACAGTGCGAAGACGATGAAGCAGAAAAAGACCAG  530

Query  507  TGAGTTCAAGTATGATGTGTTCGGATGGGTCATCTTAGCCGGTTACGTTGTTGCGTGGAT  566
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  531  TGAGTTCAAGTATGATGTGTTCGGATGGGTCATCTTAGCCAGTTACGTTGTTGCGTGGAT  590

Query  567  CAGTTTTGCCAAATCTCAGATGCCGGTGTCAAGGCAATAA  606
            |||||||||||| ||||||| ||||||||||||||| |||
Sbjct  591  CAGTTTTGCCAATTCTCAGACGCCGGTGTCAAGGCAGTAA  630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29186039407


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5