BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355897

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05820.1 | Symbols:  | Nucleotide-sugar transporter family p...   141    8e-33


> AT5G05820.1 | Symbols:  | Nucleotide-sugar transporter family 
protein | chr5:1751688-1754178 REVERSE LENGTH=1669
Length=1669

 Score =  141 bits (76),  Expect = 8e-33
 Identities = 93/100 (93%), Gaps = 5/100 (5%)
 Strand=Plus/Plus

Query  572  ttctcc-aaaatcccaac--t-ttctctttcccagtttcttcGTCTCCAGCATTTTCGCG  627
            |||||| |||||||||||  | ||||||||||| ||||||||||||||||||||||||||
Sbjct  57   TTCTCCAAAAATCCCAACTTTCTTCTCTTTCCCGGTTTCTTCGTCTCCAGCATTTTCGCG  116

Query  628  TGTTGTAACCTAATCCAA-TCTTACCCATCGATGGAATAA  666
            |||||||||||||||||| |||||||||| ||||||||||
Sbjct  117  TGTTGTAACCTAATCCAAATCTTACCCATTGATGGAATAA  156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32200088227


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5