BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355911
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1801 0.0
> AT5G40680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:16288754-16290001 FORWARD LENGTH=1248
Length=1248
Score = 1801 bits (975), Expect = 0.0
Identities = 1163/1253 (93%), Gaps = 16/1253 (1%)
Strand=Plus/Plus
Query 70 TTGATGCTACaaaaaaaTCAAGCTCGTGGAACTAGAGCAAGCTTGAACCAATTTGA-CAC 128
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |
Sbjct 7 TTGATGCTACAAAAAAATCAAGCTCGTGGAACTAGAGCAAGCCTGAGCCAATTTGAGC-C 65
Query 129 AAGAAAGCGTCTGATTGTTGGCACTAAACCCACCCTCCCTGATCTGAATGCAAAACTTTG 188
|||||||| |||||||| | |||||||||||||| |||||||||||||||| ||| |||
Sbjct 66 AAGAAAGCTTCTGATTGCTAGCACTAAACCCACCATCCCTGATCTGAATGCTGAACCTTG 125
Query 189 TTCCGACTCGGAAGAAGAAGAAGAAACAATTAAGAATCTCACAAGTCTTACACCACAAGC 248
||||||||| | ||||||||||||||| | ||||||||||||||||| |||| ||||
Sbjct 126 TTCCGACTC-G--GAAGAAGAAGAAACAGTGGAGAATCTCACAAGTCTTGCACCTCAAGA 182
Query 249 TGCACATTATGGTCTTCCTAAGCTTTTGTTCGACCTTGAGGTCGAGATCTTTGCCCGTGT 308
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 183 TGCACACAATGGTCTTCCTAAGCTTATGTTCGACCTTGAGGTCGAGATCTTTTCCCGTCT 242
Query 309 TTCATGTTTTCAATATTGGAAACTTAACT-TTCTCAACAAGCAGTTCTCGCAACTGCTAC 367
||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||||||
Sbjct 243 TTCATGTTTTCAATATTGGAAAC-TAAATCTTCTCAACAAGCAGTTTTCGCAACTGCTAC 301
Query 368 GAAA-TCGTGAGATTTTTAAAGTGAGACGAGAACGCGGACTTGTGCAACCATATGTGCTT 426
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 302 -AAAGTCGTGAGATTTTTAAAGTGAGACGAGAACGTGGACTTGTGCAACCATATGTGCTT 360
Query 427 ATGTTTTGGAGCGGTGAAACTTGTTGGGCAATGTTTGATAAAGGTTTCAAGAATTTCCGA 486
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 ATGTTTTCGAGCGGTGAAACTTGTTGGGTAATGTTTGATAAAGGTTTCAAGAATTTCCGA 420
Query 487 CAACTTCCAGAAATTCCTTCTGACTTTTGTTTCTTTTCTGGAGATAAGGAAACGATTACT 546
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 CAACTTCCAGAAATTCCTTCTGACTTTTGTTTCTTTTATGGAGATAAGGAAACGATTACT 480
Query 547 GCGGGTACGCATTTGATAGTCATCGGAAGAGAGAAAGA-GCGTATTGTGGTGTGGCGATA 605
|||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||
Sbjct 481 GCGGGTACGCATTTGATAGTCATCGGGAGAGAGGA-GAAGCGTATTGTGGTGTGGCGATA 539
Query 606 TGAGCTAGAGATAAATAAGTGGATCAAAGATAATGAAATGATCACACCGCGGGTCATGTA 665
|| |||||| |||| ||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 540 CGAACTAGAGGTAAACAAGTGGATCAACGATACTGAAATGATCACACCGCGGGTAATGTA 599
Query 666 TGCTTCCGCAAGCCGTGGGACCGATGCATTTTTCGCTGGAGGAATTAAGACAGGCGAAAA 725
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 600 TGCTTCCGCAAGCCGTGGGACCGATGCATTTTTCGCTGGAGGAATCAAGACAAGCGAAAA 659
Query 726 -GGGAGTTTCTAATGTTGTGAACATTGCTGAAAGATACAATTCCGATACAAAAACGTGGA 784
||| || || ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 660 CGGGGGTC-CTGATGTTGTGAACGTTGCTGAAAGATACAACTCCGATACAAAAACGTGGA 718
Query 785 AAGCGATGAAAGCAATGCACAAGCGAAGAAAATTCAGCTCGGGATGTTTCTTGCGTGGTA 844
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 719 AAGCGATGAAAGCAATGCACAAGCGAAGAAAATTTAGCTCGGGATGTTTCTTGCGGGGTA 778
Query 845 AGTTTTACGCTCTTGGTGGTCGGGATGAGAATGATGTATATCTTACTTGTGGAGAAAGTT 904
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 779 AGTTTTACGCTCTTGGTGGTCGAGATGAGAATGATGTGTACCTTACTTGTGGAGAAAGTT 838
Query 905 ACGATGAATTAACAGATTCATGGAAGTTGATACCAAACATGCTCAAAGGCATGACTTTCA 964
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 ACGATGAGTTAACAGATTCATGGAAGTTGATACCAGACATGCTCAAAGGCATGACTTTCA 898
Query 965 TGAATCCCCAATCTCCGCCTCTCATCGCGGTGGTCAAGGACAACCTCTACTTGCTGGAGA 1024
||||||||||||| || || || || || ||||||||||||||||||||||||||||| |
Sbjct 899 TGAATCCCCAATCCCCTCCACTTATTGCTGTGGTCAAGGACAACCTCTACTTGCTGGAAA 958
Query 1025 CATGGTTGAACGAGCTTTGGGTTTATGATATAAACGCAAACGCATGGAAAAGTCTTGGAG 1084
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 959 CATGGTTGAACGAGCTTTGGGTTTATGATATAAACGCAAACGTTTGGAAAAATCTTGGAG 1018
Query 1085 TTGTACCTGTGAAAGCAAATGCAGCTTTAGGTTGGGGAGTTGCATTTAAGTCAGTTGGAG 1144
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTGTGCCTGTGAAAGCAAATGCTGCTTTAGGTTGGGGAGTTGCATTTAAGTCAGTTGGAG 1078
Query 1145 ATAGGCTTTTGGTGATTGGAGCTTCAGCTACTCAATCGTGGGATAACAACACAATGTCAG 1204
||||| ||||||||||||||||||||| |||| |||||||||||||||| | | ||||||
Sbjct 1079 ATAGGATTTTGGTGATTGGAGCTTCAGTTACTAAATCGTGGGATAACAA-A-A-TGTCAG 1135
Query 1205 TTTACACATGTCGCCCATCTCCAAAAGTGGAAAAGATTATTTGGGAGGAGACTCGTTGCG 1264
||||||||||| |||||| |||||||||||||||||||| ||||||||||||| | ||||
Sbjct 1136 TTTACACATGTTGCCCATTTCCAAAAGTGGAAAAGATTACTTGGGAGGAGACTAGCTGCG 1195
Query 1265 ATGGCGTTAAACTCAGCCATTTTATCCGTAACTGTTGTGTGATGCTTGCTTAA 1317
|| | ||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATTGTGTTCAGCTCGGCCATTTTATCCGTAACTGTTGTGTGATGCTTGCTTAA 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5