BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355923
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1092 0.0
> AT5G40600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: endomembrane system; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink). | chr5:16253469-16256829 REVERSE
LENGTH=2480
Length=2480
Score = 1092 bits (591), Expect = 0.0
Identities = 682/726 (94%), Gaps = 6/726 (1%)
Strand=Plus/Plus
Query 1 ATGACTCCTTCATTGGAGAGCAGTAAAACTGGACCAGACGTTTTTGGCTACTATAGAACT 60
|||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||| ||
Sbjct 320 ATGACTCCTTCATTGGAGAGCAATAGAACTGGACCAGACTTTTTTGGCTACTACAGAGCT 379
Query 61 CAAGTAGAAGAGCTCTTATCTCAAGAAGAGAAGATCCCTCATCATAAACATGTGGATACT 120
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 380 CAAGTAGAAGAGCTCTTGTCTCAAGAAGAGAAGATACCTCATCATAACCATGTGGATGCT 439
Query 121 AAGAAGTCTTCTACTGAGATTATAGGAGCTGAGTTGTCGGATCTCAAAAACGAGAAGTTG 180
|||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 440 AAGAAGTCTTCTGCTGAGATTATAGGAGCTGAGTTGTCGGATGTCAAACAGGAGAAGTTG 499
Query 181 AATGCATTGTTAAGGCAGTGTGTGTTGGATTCCATTCCAGAAGTTGATGAGATGCAGTCA 240
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 500 AATGCCTTGTTAAGGCAGTGTGTGTTGAATTCCATTCCAGAAGTTGATGAGATGCAGTCT 559
Query 241 CGTGTTGATTCATTGCATCTGATGTCTCAGTTGAGTAATAAAAAACCGTCAACCTTACCA 300
|||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 560 CGTGTTGATTCAATGTATCTGATGTCTCAGTTGAGTAATAAAAAACGGTCAACCTTACCA 619
Query 301 ACCAATGCTGAGTCTGTGATTCCTGAGGATCCTTCGTTTAAAGAGGTGGAAGATGATTTA 360
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 620 ACCAATGCTGAGTCTGTGATTCCTGAGGATCCTAGGTGTAAAGAGGTGGAAGATGATTTA 679
Query 361 CAATTACTTATGAAGTCTGATCCT-GCTCTTGTTAAGGAAATAGTGGGCAAACATTCAAG 419
| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 680 CGATTACTTATGAAGTCTGATCCTAG-TCTTGTTAAGGAAATAGTGGGCAAACATTCAAG 738
Query 420 TGATCTACTTGCCAGATTGAATGACGTG-CAGCAGCAACTTGAGAAACTACTTGACAATG 478
||||||||||||||||||||| || | | |||||||| |||||||| |||||||||||||
Sbjct 739 TGATCTACTTGCCAGATTGAACGA-GAGACAGCAGCACCTTGAGAAGCTACTTGACAATG 797
Query 479 TGGTAACCACATGCAGACCTATGAGCCGTGGAGAGAAGCGAGATCTTCAGAGATCAATTA 538
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 798 TGGTAACCACTTGCAGACCTATGAGCCGTGGAGAGAAGCGAGATCTTCAGAAATCAATTA 857
Query 539 AGGAATTACCTGGAGAAAATCTTGAACGCGTTGCTGGAATCATCAAAAACCACTATGTAG 598
||||| |||||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 858 AGGAACTACCTGCAAAAAATCTTGAACGTGTTGCTGGAATCATCAAAAACCACTATGTAG 917
Query 599 CTTTGGGTAAAGAAATGCCTGATGATGTTTTCGTCATCAACATGGAGGAGGAGGACAACA 658
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 918 CTTTGGGGAAAGAAATGCCTGATGATGTTTTCGTCATCAACATGGAGGAGGAGGACAA-A 976
Query 659 -TACTGCTTTGGAGATTGCATTATTTTGTCGCCGCAGTCAAGAGTGCAAGGAAACTCGCT 717
|||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||
Sbjct 977 GTACTGCTTTGGAGATTGCATTATTTTGTTGTCGCAGTCCAGAGCGCAAGGAAACTCGCT 1036
Query 718 AGCTGA 723
||||||
Sbjct 1037 AGCTGA 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5